| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,371,322 – 6,371,438 |
| Length | 116 |
| Max. P | 0.863689 |
| Location | 6,371,322 – 6,371,438 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 87.64 |
| Shannon entropy | 0.23835 |
| G+C content | 0.59601 |
| Mean single sequence MFE | -43.32 |
| Consensus MFE | -36.86 |
| Energy contribution | -37.42 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.863689 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6371322 116 - 21146708 GAAUGCUGAUGAAGUGAUGCGAGUUCAGAACGCCACAGCUACGCGUGUGGUGGGUGCUGCCGCUGGCGCCGCCGCCUCAUUUCAUCCAAGGCCCAAAUACACCCUGAAGACAGCGG ....(((((((((((((.(((.((......(((((((((...)).)))))))((((((......))))))))))).))))))))))...))).........(((((....))).)) ( -44.10, z-score = -1.60, R) >droAna3.scaffold_13266 17844001 92 - 19884421 GAAUGCUGAUGAAAUGAUGCGGACACA------------------------GGGUGCAGCCGCUGGCACCGCCGCCUCAUUUCAUCCAAGGCUCAAAUACCCGAUGAACGCAGCGG ....(((((((((((((.((((.....------------------------.(((((........))))).)))).))))))))))...)))........(((.((....)).))) ( -32.30, z-score = -1.62, R) >droEre2.scaffold_4845 3207983 116 + 22589142 GAAUGCUGAUGAAGUGAUGCGGGUUCAGAACGCCACAGCUACGCAUGUGGUGGGUGCUGCCGCUGGCGCCGCCGCCUCAUUUCAUCCACGGCCCAAAUUCACACUGAAGACAGCGG (((((((((((((((((.((((........(((((((((...)).)))))))((((((......)))))).)))).))))))))))...)))....)))).(.(((....))).). ( -47.10, z-score = -1.84, R) >droYak2.chr2R 18370292 116 + 21139217 GAAUGCUGAUGAAGUGAUGCGGGUUCAGAACGCCACAGCUACGCAUGUGGUGGGUGCUGCCGCUGGCGCCGCCGCCUCAUUUCAUCCACGGCCCAAAUUCACCCUGAAGACAGCGG (((((((((((((((((.((((........(((((((((...)).)))))))((((((......)))))).)))).))))))))))...)))....)))).(((((....))).)) ( -48.20, z-score = -2.11, R) >droSec1.super_1 3982895 116 - 14215200 GAAUGCUGAUGAAGUGAUGCGAGUUCAGAACGCCACAGCUACGCGUGUGGUGGGUGCUGCCGCUGGCGCCGCCGCCUCAUUUCAUCCACGGCCCAAAUACACCCUGAAGACAGCGG ....(((((((((((((.(((.((......(((((((((...)).)))))))((((((......))))))))))).))))))))))...))).........(((((....))).)) ( -44.10, z-score = -1.43, R) >droSim1.chr2R 4999844 116 - 19596830 GAAUGCUGAUGAAGUGAUGCGAGUUCAGAACGCCACAGCUACGCGUGUGGUGGGUGCUGCCGCUGGCGCCGCCGCCUCAUUUCAUCCACGGCCCAAAUACACCCUGAAGACAGCGG ....(((((((((((((.(((.((......(((((((((...)).)))))))((((((......))))))))))).))))))))))...))).........(((((....))).)) ( -44.10, z-score = -1.43, R) >consensus GAAUGCUGAUGAAGUGAUGCGAGUUCAGAACGCCACAGCUACGCGUGUGGUGGGUGCUGCCGCUGGCGCCGCCGCCUCAUUUCAUCCACGGCCCAAAUACACCCUGAAGACAGCGG ....(((((((((((((.(((.........(((((((((...)).)))))))((((((......))))))..))).))))))))))...))).........(.(((....))).). (-36.86 = -37.42 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:12:28 2011