| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,340,960 – 6,341,068 |
| Length | 108 |
| Max. P | 0.852257 |
| Location | 6,340,960 – 6,341,068 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 68.20 |
| Shannon entropy | 0.52328 |
| G+C content | 0.38751 |
| Mean single sequence MFE | -18.14 |
| Consensus MFE | -9.22 |
| Energy contribution | -9.50 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.852257 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6340960 108 + 21146708 --UCAAAUGCUGAAAACAUCACAUAAACU--AGUUUGUUUGAGUGAAGAUUUCACGCUUAAUCCGCAGUGACUACAUAGGCAUGCUAAACACCAAAACCGGGAACCCCCAGA --....(((((((((.(.((((.(((((.--.....))))).)))).).)))).((((........))))........)))))................(((....)))... ( -22.60, z-score = -1.42, R) >droEre2.scaffold_4929 18601086 91 - 26641161 --------------------AAAUAAACAAAAUUUCGUUUGAGUGAAGAUUUCACGCUAAAUCCGAAGUGACUUCAUAGGCAUUCCGAACACCAAA-CCGGGAACCCCCAGA --------------------................(((((.(((..((..((((............))))..))...((....))...)))))))-).(((....)))... ( -17.70, z-score = -1.20, R) >droYak2.chr2L 18978283 95 + 22324452 --------------UCAUUCACAUAAACA--AUUUUGUUUGAGUGAAGAUUUCACGCUAAAUCCGUAGUGAUUUCAUAGGCAUGCUAAACACCAAG-CCGGGAAUCCCCAGA --------------...(((((.((((((--....)))))).)))))((..((((((.......)).))))..))...(((.((........)).)-))(((....)))... ( -24.10, z-score = -2.76, R) >droSec1.super_1 3952724 91 + 14215200 AUUCAAAUACUAAAAACAUCACAUAAACU--AGUUUGUUUAAGUGAAGAUUUCAAGCUCAAUUCGCA---------------UACUAAACACCUAA-CCGGGAAUCCCC--- ..................((((.(((((.--.....))))).)))).((((((..((.......)).---------------.......(......-..)))))))...--- ( -11.90, z-score = -1.48, R) >droSim1.chr2R 4969382 91 + 19596830 AUUCAAAUACUGAAAACAUCGCAUAAACU--AGUUUGUUUGAGUGAAGAUUUCACGCUCAAUUCGCA---------------UACUAAACACCAAA-UUGGGAAUCCCC--- ..........(((((.(.((((.(((((.--.....))))).)))).).))))).((.......)).---------------..............-..(((....)))--- ( -14.40, z-score = -0.88, R) >consensus __UCAAAU_CU_AAAACAUCACAUAAACU__AGUUUGUUUGAGUGAAGAUUUCACGCUAAAUCCGCAGUGA_U_CAUAGGCAUACUAAACACCAAA_CCGGGAAUCCCCAGA ..................((((.(((((........))))).)))).....................................................(((....)))... ( -9.22 = -9.50 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:12:23 2011