| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,288,831 – 6,288,926 |
| Length | 95 |
| Max. P | 0.639473 |
| Location | 6,288,831 – 6,288,926 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 71.75 |
| Shannon entropy | 0.47880 |
| G+C content | 0.42514 |
| Mean single sequence MFE | -24.80 |
| Consensus MFE | -8.84 |
| Energy contribution | -10.12 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.639473 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6288831 95 + 21146708 UUUAAUUGCUCAAAAGUGGAAGGAACUCGAUGACAAUUGAA--ACUCUUUGAGGUUUCAA---CCACCCAGCGAUGCCUUC---AAUUG-CCGCAAAUGAGCUG .......(((((...((((..((((((((((....))))).--.(((...))))))))..---))))...(((((......---.))))-)......))))).. ( -24.50, z-score = -1.88, R) >droAna3.scaffold_13266 4752433 98 + 19884421 UUUAAUUGCUCA--AGUGGAAGAAACUCGAAGACAAUUGAA--AAUCAUCGAGGUUAGAGGCGCCACCAAAUGAUGCCUUCC--AAUUGGCCGCAAAUGAGCUG .......(((((--.((((..((..(((((.((........--..)).)))))....((((((.((.....)).))))))..--..))..))))...))))).. ( -25.50, z-score = -1.56, R) >droSim1.chr2R 4912308 93 + 19596830 UUUAAUUGCUCA--AGUGGAGGGAACUCGAAGACAAUUGAA--ACUCUUUGAGGUUUCAA---CCACCCAGCGAUGCCUUC---AAUUG-CCGCAAAUGAGCUG .......(((((--.((((..((((((((((((........--..))))))).)))))..---))))...(((((......---.))))-)......))))).. ( -27.90, z-score = -2.48, R) >droSec1.super_1 3901496 93 + 14215200 UUUAAUUGCUCA--AGUGGUAGGAACUCGAAGACAAUUGAA--ACUCUUUGAGGUUUCAA---CCACCCAGCGAUGCCUUC---AAUUG-CUGCAAAUGAGCUG .......(((((--.(((((.((((((((((((........--..))))))).))))).)---)))).(((((((......---.))))-)))....))))).. ( -32.90, z-score = -4.40, R) >droGri2.scaffold_15245 3359454 91 - 18325388 -GUAACUGCCUG--UGUUGAACACGUUC--ACACUAUUGAAUAAUAUUUCAUGGUCACAC---CUUUUUAACGCUGCUCUUAAAAACUG-CCAACUUUGA---- -.(((..((..(--(((((((...((..--..(((((.(((......))))))))...))---...)))))))).))..))).......-..........---- ( -13.20, z-score = -0.69, R) >consensus UUUAAUUGCUCA__AGUGGAAGGAACUCGAAGACAAUUGAA__ACUCUUUGAGGUUUCAA___CCACCCAGCGAUGCCUUC___AAUUG_CCGCAAAUGAGCUG .......(((((...((((.......((((......))))..........(((((.((..............)).)))))..........))))...))))).. ( -8.84 = -10.12 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:12:20 2011