| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,259,115 – 6,259,216 |
| Length | 101 |
| Max. P | 0.792996 |
| Location | 6,259,115 – 6,259,216 |
|---|---|
| Length | 101 |
| Sequences | 8 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 65.73 |
| Shannon entropy | 0.67149 |
| G+C content | 0.44288 |
| Mean single sequence MFE | -20.14 |
| Consensus MFE | -8.61 |
| Energy contribution | -8.74 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.792996 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6259115 101 + 21146708 CUUGGCC-CUAAGGCCAUCC--------------CUUUCUUAAUUCACC-GCGCGGUUUCUUCGAGUGUACACACCCCAUGCCAGUGUUUGAACAGCCUGUUGCUGUUAAUACAAUA ..(((((-....)))))...--------------...............-....(((......(.(((....))))....))).(((((..((((((.....))))))))))).... ( -21.70, z-score = -0.61, R) >droSim1.chr2R 4882055 101 + 19596830 CUUGGCC-CAAAGACCAUCA--------------CUUUCUUAGUUAUUC-GCUCGGUUUCUUCGAGUGUACACAUCCCAUACCAGUGUUUGAACAGCCUGUUGCUGUUAAUACAAUA ..(((..-..((((......--------------...)))).((....(-((((((.....))))))).))..........)))(((((..((((((.....))))))))))).... ( -20.70, z-score = -1.23, R) >droSec1.super_1 3865845 101 + 14215200 CUUGGCC-CAAAGGCCAUCC--------------CUUUUUUAGUUCGCC-GCGCGAUUUCUUCGAGUGUACACAUCCCAUACCAGUGUUUGAACAGCCUGUUGCUGUUAAUACAAUA ..(((((-....)))))...--------------..............(-((.(((.....))).)))................(((((..((((((.....))))))))))).... ( -22.50, z-score = -1.43, R) >droYak2.chr2L 18885935 111 + 22324452 CUUGGCC-CUAAGGCCAUCCGUUUUUGCACUACCCUUUCUUCGCCGGCCUG-----UUUCUUCGAGUGUACACUUCCCGUCCCUCUGUUUGAACAGCCUGUUGCUGUUAAUACAAUA ..(((((-....)))))........((((((...........(....)...-----........))))))...............(((...((((((.....))))))...)))... ( -20.75, z-score = -0.59, R) >droEre2.scaffold_4929 18527803 117 - 26641161 CUUGGCCUCUAAGACCAUCCGUUUUCGCACUACCCUUUCUUAGUUCGCCCGCGCGGUUUCUUCGAGUGUACACUUCCCGUCCUAGUGUUUGAACAGCCUGUUGCUGUUAAUACAAUA ....(((((.((((....((((...((.((((........)))).)).....))))..)))).))).))...............(((((..((((((.....))))))))))).... ( -23.60, z-score = -0.78, R) >droAna3.scaffold_13266 4722425 93 + 19884421 AUCGAUC-AGAAGCUGAUAUGC----------AAAGUAAAUAGUUUUCAUA-ACAAAUUCCUCGAGUGUAGAG------------UGUUUGCACAGCCUGUUGCUGUUAAUACAAUA .((((..-.(((..((.((((.----------(((.(....).))).))))-.))..))).)))).......(------------((((...(((((.....))))).))))).... ( -16.80, z-score = -0.03, R) >dp4.chr3 12592444 82 - 19779522 -----------------UCCGU------GUCAAACUUCGUCAUAUCCCCUGAACGAUUUCUUCGAGUGUACGC------------UGUUUGAACAGCCUGUUGCUGUUAAUACAAUA -----------------...((------(((((((..((((((.((....)).(((.....))).))).))).------------.)))))((((((.....)))))).)))).... ( -18.10, z-score = -2.27, R) >droPer1.super_2 1649704 82 - 9036312 -----------------UCCGU------GUCAAACUUCGUCAUAUCCCCUGAACGAUUUAUUCGAGUGUACUC------------UGUUUGAACAGCCUGUUGCUGUUAAUACAAUA -----------------...((------(((((((.((((((.......)).)))).......(((....)))------------.)))))((((((.....)))))).)))).... ( -17.00, z-score = -2.29, R) >consensus CUUGGCC_CUAAGGCCAUCCGU____________CUUUCUUAGUUCGCCUGCACGAUUUCUUCGAGUGUACAC_UCCC_U_CCAGUGUUUGAACAGCCUGUUGCUGUUAAUACAAUA .....................................................................................(((...((((((.....))))))...)))... ( -8.61 = -8.74 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:12:14 2011