| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,227,466 – 6,227,533 |
| Length | 67 |
| Max. P | 0.874413 |
| Location | 6,227,466 – 6,227,533 |
|---|---|
| Length | 67 |
| Sequences | 7 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 63.27 |
| Shannon entropy | 0.70634 |
| G+C content | 0.53022 |
| Mean single sequence MFE | -21.97 |
| Consensus MFE | -6.77 |
| Energy contribution | -7.55 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.874413 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6227466 67 - 21146708 UAGUGGCGGGCUGGACGGGAAACGGAUGU---ACGGUGUA--UCCUGCCAGGAUACAAUCGCCAGCACACUG-- (((((....(((((.(.(....).)....---.(((((((--(((.....)))))).))))))))).)))))-- ( -27.10, z-score = -2.71, R) >droEre2.scaffold_4929 18496433 67 + 26641161 UAGUGGCGGGCUGGACGGAAAACGGAUGU---ACGGUGUA--UCCUGCCAGGAUACAACCGCCGGCACACAG-- ..(((....(((((.(((....((.....---.)).((((--(((.....))))))).)))))))).)))..-- ( -27.80, z-score = -2.79, R) >droYak2.chr2L 18852406 67 - 22324452 UAGUGGCGGGCUGGACGGGAAACGGAUGU---ACGGUGUA--UCCUGCCAGGAUACAACCGCCGGCACACAG-- ..(((((.(((....(.(....).)....---..((((((--(((.....)))))).)))))).)).)))..-- ( -29.10, z-score = -2.92, R) >droSec1.super_1 3834447 67 - 14215200 UAGUGGCGGGCUGGACGGGAAACGGAUGU---ACGGUGUA--UCCUGCCGGGAUACAAACGCCAGCACACUG-- (((((....(((((.(((....)......---....((((--(((.....)))))))..))))))).)))))-- ( -26.50, z-score = -2.48, R) >droSim1.chr2R 4850722 67 - 19596830 UAGUGGCGGGCUGGACGGGAAACGGAUGU---ACGGUGUA--UCCUGCCGGGAUACAAACGCCAGCUCUCUG-- ....((.(((((((.(((....)......---....((((--(((.....)))))))..))))))))).)).-- ( -26.80, z-score = -2.30, R) >droGri2.scaffold_15245 12962697 67 - 18325388 UGAGGUUGAACCAGACAGACAGUAAAUGCAGAGCGAUUAAAGUUUUCUUAGGCCGCACAACCAAUCG------- ...(((((..(((((.((((..(((.(((...))).)))..)))))))..)).....))))).....------- ( -11.20, z-score = -0.43, R) >triCas2.ChLG2 10797210 61 - 12900155 -------UGGAUGUGAAAAUCGUUUAUGU--AACUCUUUA--UUCU-UCAAAAUGUAGUUUCCA-UACACAAUU -------..(((......)))((.((((.--((((...((--((..-....)))).))))..))-)).)).... ( -5.30, z-score = 0.57, R) >consensus UAGUGGCGGGCUGGACGGGAAACGGAUGU___ACGGUGUA__UCCUGCCAGGAUACAAACGCCAGCACACAG__ ...((((((((.(((.......((.........)).......))).))).(....)...))))).......... ( -6.77 = -7.55 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:12:13 2011