| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,162,919 – 6,162,999 |
| Length | 80 |
| Max. P | 0.642298 |
| Location | 6,162,919 – 6,162,999 |
|---|---|
| Length | 80 |
| Sequences | 12 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 71.93 |
| Shannon entropy | 0.55696 |
| G+C content | 0.46795 |
| Mean single sequence MFE | -24.30 |
| Consensus MFE | -13.05 |
| Energy contribution | -13.12 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.36 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.642298 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6162919 80 - 21146708 ---------------CUAAUUUGCUGCGAGCUUGGUAUCGGACAUUAGAAAUGUUUUGGCACUGCGCCAAUCUGCUGACAGCUGGAAGCAGCUUU ---------------.......(((((.((((..(((...(((((.....)))))(((((.....)))))..)))..)..)))....)))))... ( -21.40, z-score = 0.13, R) >droPer1.super_2 1549291 94 + 9036312 CUAGCCGGCUCCCAGCUGAUUUGCUGAGCUCUUGGUAUUGCGAAU-AGAAAUGUUUUGGCGUUCGGCCAAUCUAUUGACAGCUGGAAGCAGCUUU ..(((..(((.(((((((((((((...((.....))...))))))-...((((..(((((.....)))))..))))..))))))).))).))).. ( -33.40, z-score = -1.87, R) >dp4.chr3 12492204 94 + 19779522 CUAGCCGGCUCCCAGCUGAUUUGCUGAGCUCUUGGUAUUGCGAAU-AGAAAUGUUUUGGCGUUCGGCCAAUCUAUUGACAGCUGGAAGCAGCUUU ..(((..(((.(((((((((((((...((.....))...))))))-...((((..(((((.....)))))..))))..))))))).))).))).. ( -33.40, z-score = -1.87, R) >droAna3.scaffold_13266 4625851 79 - 19884421 ---------------CUAUUUUGCUGGGCACUUGGUAGCUCGGAUGUGAAAUG-UUUGGCACAGGGCCAGUCUCCAGCCAGCUGGAAGCAGCUUU ---------------.......(((((((.((((...((.(((((((...)))-)))))).)))))))....(((((....)))))..))))... ( -26.30, z-score = -0.09, R) >droEre2.scaffold_4929 18428682 80 + 26641161 ---------------CUAAUUUGCUGCGAGCCUGGCACCGGACAUUAGAAAUGUUUUGGCACUGCGCCAAUCUGCUGACAGCUGGAAGCAGCUUU ---------------.......(((((...((.(((....(((((.....)))))(((((.....)))))..........)))))..)))))... ( -23.10, z-score = -0.08, R) >droYak2.chr2L 18789479 80 - 22324452 ---------------CUAAUUUGCUGCGAGCUUGGUAUCGGACAUUAGAAAUGUUUUGGCACUGCGCCAAUCUGCUGACAGCUGGAAGCAGCUUU ---------------.......(((((.((((..(((...(((((.....)))))(((((.....)))))..)))..)..)))....)))))... ( -21.40, z-score = 0.13, R) >droSec1.super_1 3770278 80 - 14215200 ---------------CUAAUUUGCUGCGAACUUGGUAUCGGACAUUAGAAAUGUUUUGGCACUGCGCCAAUCUGCUGACAGCUGGAAGCAGCUUU ---------------.......(((((....(..((.((((((((.....)))).(((((.....)))))....))))..))..)..)))))... ( -20.60, z-score = -0.31, R) >droSim1.chr2R 4787330 80 - 19596830 ---------------CUAAUUUGCUGCGAGCUUGGUAUCGGACAUUAGAAAUGUUUUGGCACUGCGCCAAUCUGCUGAUAGCUGGAAGCAGCUUU ---------------.......(((((...((.(.((((((((((.....)))).(((((.....)))))....)))))).).))..)))))... ( -25.10, z-score = -1.30, R) >droVir3.scaffold_12566 10212 79 + 17892 ---------------CUGUUUUUCUGAGCACCUGGUGCUUGCCAAUAGAAG-GUUUUGGCAUUUUGCCAAUCUAUCGACAGCUGGAAACAGCUUU ---------------(((((....(((((((...)))))))..)))))..(-((.(((((.....)))))...)))...(((((....))))).. ( -24.60, z-score = -1.88, R) >droMoj3.scaffold_6496 19140391 79 + 26866924 ---------------CUUUUUUGCUGGGCACCUGGUGCCAUCUAAUAGAAG-GUUUUGGCAUUUUGCCAAUCUGUUGACAGCUGGAAACAGCUUU ---------------...........(((((...)))))...(((((((..-...(((((.....))))))))))))..(((((....))))).. ( -26.50, z-score = -2.11, R) >droGri2.scaffold_15245 12865315 76 - 18325388 ------------------UUUUGCUGAGCACCUAGUACAAGCAAACAGAAGGCUU-UGGGAUUUUGCCAGAUAACUGACAGCUGGAAACAGCUUU ------------------.((((((..((.....))...))))))(((.....((-(((.......)))))...)))..(((((....))))).. ( -19.40, z-score = -0.97, R) >droWil1.scaffold_181009 937484 73 + 3585778 ------------------UUUUGCUGAGCACUUGGUAUAAGCAAAUAGAAAACUUCUGGCAUUUAGCCAACUUUUGGGAAACUGGAAACGG---- ------------------.((((((..((.....))...))))))...........((((.....))))..(((..(....)..)))....---- ( -16.40, z-score = -1.35, R) >consensus _______________CUAAUUUGCUGAGCACUUGGUAUCGGACAUUAGAAAUGUUUUGGCACUGCGCCAAUCUGCUGACAGCUGGAAGCAGCUUU .....................((((........))))..................(((((.....))))).........(((((....))))).. (-13.05 = -13.12 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:12:07 2011