| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,157,252 – 6,157,370 |
| Length | 118 |
| Max. P | 0.661903 |
| Location | 6,157,252 – 6,157,370 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.07 |
| Shannon entropy | 0.17094 |
| G+C content | 0.44428 |
| Mean single sequence MFE | -36.74 |
| Consensus MFE | -29.02 |
| Energy contribution | -28.86 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.661903 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6157252 118 + 21146708 AAGUAUUCUCUGGGGGAUUUUUAUCGCAGCCUAAAAAUCUCUGACCAAAAUAGAGGUUCUACAUUUUUU-AGGGCGCCCCGGGGAGUGACGAAUCACCCUUUUU-GGGACUGAAUCACAA ..((((((((((((((((....)))((..((((((((.....((((........))))......)))))-))))).))))))))))).))((.((((((.....-)))..))).)).... ( -39.00, z-score = -2.40, R) >droSim1.chr2R 4781523 119 + 19596830 AAGUAUUCUCUGGGGGAUUUUUAUCGCAGCCUAAAAAUCUCUGACCAAAAUAGAGGCUCUACACUUUUUUGGGGCGCCCCAGGGAGUGACGAAUUACCCUUUUU-GGGACUGAAUCACAA ..(((((((((((((((((((((........)))))))).....((((((.((.(......).)).))))))....))))))))))).))((.((((((.....-)))..))).)).... ( -36.70, z-score = -1.73, R) >droSec1.super_1 3763753 118 + 14215200 AAGUAUUCUCUGGGGGAUUUUUAUCGCAGCCUAAAAAUCUCUGACCAAAAUAGAGGUUCUACACUUUUU-AGGGCGCCCCAGGGAGUGACGAAUCGCCCUUUUU-GGGACUGAAUCACAA ..((((((((((((((((....)))((..((((((((.....((((........))))......)))))-))))).))))))))))).))((.((.(((.....-)))...)).)).... ( -38.60, z-score = -2.27, R) >droYak2.chr2L 18783746 119 + 22324452 AAGUACUCUCAGGGGGAUUUUUAUCGCAGCCGAAAAUUUGCUGACCAAAAAAGAGGUUCUACAUUUUCU-AGGGCGCCCUGGGGAGUGACGAAUCACCCUUUUUUAAGAUUGAAUCACAA .....(((....)))(((((..(((.((((.........))))...(((((((.(((((..((((..((-(((....)))))..))))..)))))...)))))))..))).))))).... ( -32.40, z-score = -0.94, R) >droEre2.scaffold_4929 18422927 118 - 26641161 AAGUAUUCUCUGGGGGACUUUUAUCGCAGCCGAAAAAUCGCUGACCAUAAAAGAGGUUCUACAUUUUUA-AGGGCGCCCCGGGGAGUGACGAAUCAGCCCUUUU-AGGAUUGAAACACAA ..(((((((((((((..(((((((.(((((.((....)))))).).)))))))..(((((.........-))))).))))))))))).))...(((..((....-.))..)))....... ( -37.00, z-score = -1.89, R) >consensus AAGUAUUCUCUGGGGGAUUUUUAUCGCAGCCUAAAAAUCUCUGACCAAAAUAGAGGUUCUACAUUUUUU_AGGGCGCCCCGGGGAGUGACGAAUCACCCUUUUU_GGGACUGAAUCACAA ..((((((((((((((((....)))...(((.(((((.....((((........)).)).....)))))...))).))))))))))).))((.(((..(((....)))..))).)).... (-29.02 = -28.86 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:12:07 2011