Locus 354

Sequence ID	dm3.chr2L
Location	2,455,044 – 2,455,141
Length	97
Max. P	0.718094

overview

Window 4

Location	2,455,044 – 2,455,141
Length	97
Sequences	12
Columns	107
Reading direction	forward
Mean pairwise identity	89.57
Shannon entropy	0.22737
G+C content	0.53400
Mean single sequence MFE	-32.28
Consensus MFE	-28.96
Energy contribution	-28.88
Covariance contribution	-0.09
Combinations/Pair	1.21
Mean z-score	-1.20
Structure conservation index	0.90
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.49
SVM RNA-class probability	0.718094
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 2455044 97 + 23011544
--------GUCUCGUUUCAGAGU--UGCAAGCGACCAUGCGCGCAUGGCUUCUACUCCUCGCAGUGCUGGCGACUUUUCAAACGAUUGUUCGAGUUGCUAGCACCGA
--------(((((......))).--.))..(((((((((....)))))..........)))).(((((((((((((..(((....)))...)))))))))))))... ( -33.30, z-score =  -1.30, R)
>droSec1.super_5 628567 97 + 5866729
--------GUCUCGUUUCAGAGU--UGCAAGCGACCAUGCGCGCAUGGCUUCUACUCCUCGCAGUGCUGGCGACUUUUCAAACGAUUGUUCGAGUUGCUAGCACCGA
--------(((((......))).--.))..(((((((((....)))))..........)))).(((((((((((((..(((....)))...)))))))))))))... ( -33.30, z-score =  -1.30, R)
>droYak2.chr2L 2445267 97 + 22324452
--------GUCUCGUUUCAGAGU--UGCAAGCGACCAUGCGCGCAUGGCUUCUACUCCUCGCAGUGCUGGCGACUUUUCAAACGAUUGUUCGAGUUGCUAGCACCGA
--------(((((......))).--.))..(((((((((....)))))..........)))).(((((((((((((..(((....)))...)))))))))))))... ( -33.30, z-score =  -1.30, R)
>droEre2.scaffold_4929 2499232 97 + 26641161
--------GUCUCGUUUCAGAGU--UGCAAGCGACCAUGCGCGCAUGGCUUCUACUCCUCGCAGUGCUGGCGACUUUUCAAACGAUUGUUCGAGUUGCUAGCACCGA
--------(((((......))).--.))..(((((((((....)))))..........)))).(((((((((((((..(((....)))...)))))))))))))... ( -33.30, z-score =  -1.30, R)
>droAna3.scaffold_12913 195719 97 - 441482
--------GUUUCGUUUCAGAGU--UGCAAGCGACCAUGCGCGCAUGGCUUCUACUCCUCGCAGUGCUGGCGACUUUUCAAACGAUCGUUCGAGUUGCUAGCACCGA
--------...(((.....((((--.(.((((...((((....))))))))).))))......(((((((((((((....(((....))).)))))))))))))))) ( -31.70, z-score =  -0.86, R)
>dp4.chr4_group4 1721007 97 + 6586962
--------GUAUCGUUCCAGAGU--UGCAAGCGACCAUGCGCGCAUGGAUUCUACUCCUCGCAGUGCUGGCGACUUCUCAACCGAUCGUUCAAGUUGCUAGCACCGA
--------...(((.........--.....(((((((((....)))))..........)))).(((((((((((((...(((.....))).)))))))))))))))) ( -30.50, z-score =  -1.06, R)
>droPer1.super_10 724431 97 + 3432795
--------GUAUCGUUCCAGAGU--UGCAAGCGACCAUGCGCGCAUGGAUUCUACUCCUCGCAGUGCUGGCGACUUCUCAACCGAUCGUUCAAGUUGCUAGCACCGA
--------...(((.........--.....(((((((((....)))))..........)))).(((((((((((((...(((.....))).)))))))))))))))) ( -30.50, z-score =  -1.06, R)
>droWil1.scaffold_180703 2982121 97 + 3946847
--------GUAUCGUUUCAGAGU--UACAAGCGACCAUGCGCGCAUGGCUUCUACUCCUGGCAGUGCUGGCGACUUUUCAAACGAUCGUUCAAGUUGCUAGCACCGA
--------...(((..(((((((--...((((...((((....))))))))..))).))))..(((((((((((((....(((....))).)))))))))))))))) ( -32.00, z-score =  -1.74, R)
>droVir3.scaffold_12963 9813280 97 + 20206255
--------GUAUCGUUUCAGAGU--UGCAAGCGACCAUGCGCGCAUGGCUUCUACUCCUCGCAGUGCUGGCGACUUUUCAAACGAUCGUUCAAGUUGCUAGCACCGA
--------...(((.....((((--.(.((((...((((....))))))))).))))......(((((((((((((....(((....))).)))))))))))))))) ( -31.40, z-score =  -1.21, R)
>droGri2.scaffold_15252 5197327 97 - 17193109
--------GUAUCGUUUCAGAGU--UGCAAGCGACCAUGCGCGCAUGGCUUCUACUCCUCGCAGUGCUGGCGACUUUUCAAACGAUCGUUCAAGUUGCUAGCACCGA
--------...(((.....((((--.(.((((...((((....))))))))).))))......(((((((((((((....(((....))).)))))))))))))))) ( -31.40, z-score =  -1.21, R)
>droMoj3.scaffold_6500 30914174 97 - 32352404
--------GUAUCGUUUCAGAGU--UGCAAGCGACCAUGCGCGCAUGGCUUCUACUCCUCGCAGUGCUGGCGACUUUUCAAACGAUCGUUCAAGUUGCUAGCACCGA
--------...(((.....((((--.(.((((...((((....))))))))).))))......(((((((((((((....(((....))).)))))))))))))))) ( -31.40, z-score =  -1.21, R)
>anoGam1.chr3R 49470655 107 - 53272125
GUUCCGUUUUCCAAUUGCAGACUACUACCAGCGACCAUGCACGUAUGGUUCUACGUGCUCGCUGUGCUGGCGAUAUCACACGGUGCAACGCGAGUCGCUAGCACAGA
.............................(((((....(((((((......))))))))))))(((((((((((.((...((......)).)))))))))))))... ( -35.30, z-score =  -0.93, R)
>consensus
________GUAUCGUUUCAGAGU__UGCAAGCGACCAUGCGCGCAUGGCUUCUACUCCUCGCAGUGCUGGCGACUUUUCAAACGAUCGUUCAAGUUGCUAGCACCGA
...........(((................(((((((((....)))))..........)))).(((((((((((((....(((....))).)))))))))))))))) (-28.96 = -28.88 +  -0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:22 2011