| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,145,914 – 6,146,002 |
| Length | 88 |
| Max. P | 0.797661 |
| Location | 6,145,914 – 6,146,002 |
|---|---|
| Length | 88 |
| Sequences | 8 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 70.56 |
| Shannon entropy | 0.54959 |
| G+C content | 0.55272 |
| Mean single sequence MFE | -35.51 |
| Consensus MFE | -6.85 |
| Energy contribution | -6.13 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.62 |
| Mean z-score | -3.14 |
| Structure conservation index | 0.19 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.797661 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6145914 88 + 21146708 CAUUGGCUGGCUGAUUCCCCGGCUUAACCGAUUGCGAUAGGCCGGGCACU-CAGCGGCAAUUAAAGCCAAUCAGCUAAUGG---CGAUCGCG ((((((((((((((...(((((((((..((....)).)))))))))...)-))))(((.......)))...)))))))))(---(....)). ( -42.50, z-score = -4.47, R) >droSim1.chr2R 4770059 88 + 19596830 CAUUGGCUGGCUGAUUCCCCGGCUUAGCCGAUUGCGAUAGGCCGGGCACU-CAGCGGCAAUUAAAGCCAAUCAGCUAAUGG---CGAUCGCG ((((((((((((((...(((((((((..((....)).)))))))))...)-))))(((.......)))...)))))))))(---(....)). ( -44.10, z-score = -4.30, R) >droSec1.super_1 3752355 88 + 14215200 CAUUGGCUGGCUGAUUCCCCGGCUUAGCCGAUUGCGAUAGGCCGGGCACU-CAGCGGCAAUUAAAGCCAAUCAGCUAAUGG---CGAUCGCG ((((((((((((((...(((((((((..((....)).)))))))))...)-))))(((.......)))...)))))))))(---(....)). ( -44.10, z-score = -4.30, R) >droYak2.chr2L 18771819 88 + 22324452 CAUUGGCUGGCUGAUUCCCCAGCUUGGCCGAUUGCGAUAGGCCGGGCACU-CAGCGGCAAUUAAAGCCAAUCAGCUAAUGG---CGAUCGCG ((((((((((((((.......((((((((..........))))))))..)-))))(((.......)))...)))))))))(---(....)). ( -37.90, z-score = -2.37, R) >droEre2.scaffold_4929 18411784 88 - 26641161 CAUUGGCUGGCUGAUUCCCCGGCUUAGUCCAUUGCGAUAGGCCGGGCACU-CAGCGGCAAUUAAAGCCAAUCAGCUAAUGG---CGAUCGCG ((((((((((((((...(((((((((.((......)))))))))))...)-))))(((.......)))...)))))))))(---(....)). ( -42.60, z-score = -4.32, R) >droAna3.scaffold_13266 4609233 69 + 19884421 ---------------AGGCCUGCC-AGUCGAUUGCAAUAGGCCC--CAUU-CGGAGGCAAUUAAAACCAAUCGGUUAAUGG---CGAUCGC- ---------------.((....))-...(((((((.....((((--(...-.)).)))......((((....))))....)---)))))).- ( -21.50, z-score = -1.22, R) >dp4.chr3 6982772 80 + 19779522 ------------UAUUGGCUGGUUGCCUCCGACUCCGGAGGCCCAUUGCGAUAGGGGCAAUUAAAACCAAUCAACUAAUGAUCUCGACCACG ------------..(((..((((((((((((....)))))))..(((((.......)))))...)))))..))).................. ( -25.20, z-score = -2.23, R) >droPer1.super_2 7184145 80 + 9036312 ------------UAUUGGCUGGUUGCCUCCGAGUCCGGAGGCCCAUUGCGAUAGGGGCAAUUAAAACCAAUCAAGUAAUGAUCUCGACCACG ------------.......((((((((((((....))))))).(((((((((.((...........)).)))..)))))).....))))).. ( -26.20, z-score = -1.90, R) >consensus CAUUGGCUGGCUGAUUCCCCGGCUUAGCCGAUUGCGAUAGGCCGGGCACU_CAGCGGCAAUUAAAGCCAAUCAGCUAAUGG___CGAUCGCG ....................((((................((((..........))))..............))))................ ( -6.85 = -6.13 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:12:04 2011