| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,129,829 – 6,129,926 |
| Length | 97 |
| Max. P | 0.764126 |
| Location | 6,129,829 – 6,129,926 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 62.72 |
| Shannon entropy | 0.70451 |
| G+C content | 0.42378 |
| Mean single sequence MFE | -11.99 |
| Consensus MFE | -6.35 |
| Energy contribution | -6.62 |
| Covariance contribution | 0.27 |
| Combinations/Pair | 1.29 |
| Mean z-score | -0.50 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.764126 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6129829 97 + 21146708 GAAAACCAUUUACACUAAUACACCGAAAUACGUAUGAUCCACAUUUGCAA-CUAUUCUAUCUCUUGGUCGGCACGCUCGACCAUAGCCAACUUCAUUG ........................(((....(((...........)))..-.............(((((((....).))))))........))).... ( -10.10, z-score = 0.03, R) >droSim1.chr2R 4754010 97 + 19596830 GAAAACCAUUUACACUAAUACACCGAAAUACGUAUGAUCCACAUUUGCAA-CUAUUCUAUCUAUUGGUCGGCACGCUCGACCAUAGCCAACUUCAUUG ........................(((....(((...........)))..-.........((((.((((((....).))))))))).....))).... ( -11.00, z-score = -0.25, R) >droSec1.super_1 3736389 97 + 14215200 GAAAACCAUUUACACUAAUACACCGGAAUACGUAUGAUCCACAUUUGCAA-CUAUUCUAUCCAUUGGUCGGCACGCUCGACCAUAGCCAACUUCAUUG (((.....................((((((.(((...........)))..-.))))))......(((((((....).))))))........))).... ( -12.70, z-score = -0.31, R) >droEre2.scaffold_4929 18392759 74 - 26641161 ----------------------GUAAAGCAUACAC-ACUAACACUCCGAU-CCACAUUCUCACUUGGUCGGCUCACUCGACCACAGCUAACUUUAUUG ----------------------....(((......-...........((.-......)).....(((((((.....)))))))..))).......... ( -11.10, z-score = -2.48, R) >droYak2.chr2L 18755748 97 + 22324452 AACAAACAUACACACAAAUACACCGAAAUAAGUAUGAUCUACAUUUGCAU-CCUUUCUAUCUCUUGGUUGGCUCACUCGACCAUAGCUAACAUCAUUG ......(((((....................)))))..............-...............(((((((...........)))))))....... ( -9.35, z-score = -0.02, R) >droWil1.scaffold_180772 1813541 80 - 8906247 --------------GAAGGCCAUUGAAAAGGAUUUGGCCGAUGGUCUGAUACCAUUCUAUGCU---GUCGUCACUCUAGGC-ACUACCAAUUCCUGUG --------------..............((((.((((..((((((..((......))...)))---)))(((......)))-....)))).))))... ( -17.70, z-score = 0.03, R) >consensus GAAAACCAUUUACACUAAUACACCGAAAUACGUAUGAUCCACAUUUGCAA_CCAUUCUAUCUCUUGGUCGGCACGCUCGACCAUAGCCAACUUCAUUG ................................................................(((((((.....)))))))............... ( -6.35 = -6.62 + 0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:12:02 2011