| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,099,987 – 6,100,080 |
| Length | 93 |
| Max. P | 0.933210 |
| Location | 6,099,987 – 6,100,080 |
|---|---|
| Length | 93 |
| Sequences | 8 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 83.61 |
| Shannon entropy | 0.29255 |
| G+C content | 0.31517 |
| Mean single sequence MFE | -24.78 |
| Consensus MFE | -12.87 |
| Energy contribution | -13.93 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.92 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.933210 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6099987 93 + 21146708 --------------------GGAAAAGUGUGUCAUGAAAUACAUUUUAUUGUCUUAUUUGGCAUUUUU--GCCUUGUGUACUUUGACGGCGAGAAAACAAUAUUUAUGACAUACU --------------------.....(((((((((((((...........((((......))))(((((--(((..............)))))))).......))))))))))))) ( -25.94, z-score = -3.76, R) >droSim1.chr2R 4722926 94 + 19596830 --------------------GGAAAAGUGUGUCAUGAAAUACAUUUUAUUGUCUUAUUUGGCAUUUUUU-GCCUUGUGUACUUUGACGGCGAGAAAACAAUAUUUAUGACAUACU --------------------.....(((((((((((((...........((((......))))((((((-(((..............)))))))))......))))))))))))) ( -26.84, z-score = -4.06, R) >droSec1.super_1 3706611 93 + 14215200 --------------------GGAAAAGUGUGUAAUGAAAUACAUUUUAUUGUCUUAUUUGGCAUUUUU--GCCUUGUGUACUUUGACGGCGAGAAAACAAUAUUUUUGACAUACU --------------------.....(((((((...((((((........((((......))))(((((--(((..............)))))))).....))))))..))))))) ( -20.44, z-score = -2.06, R) >droYak2.chr2L 18725744 112 + 22324452 GGAAAAGUCAUGAAAUGUGUGUCAUAAAGUGUCAUGAAAUACAUUUAAUUGUCUUAUUUGCCAUUUUUG-C--UUGUGUACUUUGACGGCGAGAAAACAAAAUUUAUGACAUACU ................((((((((((((((((......))))......((((.((.((((((.((..((-(--....)))....)).)))))))).))))..)))))))))))). ( -25.00, z-score = -1.54, R) >droEre2.scaffold_4929 18362991 94 - 26641161 --------------------GGAAAAGUGUGUCAUGAAAUACAUUUUAUUGUCUUAUUUGGCAUUUUUU-GCCUUGUGUAUUUUGACGGCGAGAAAACAAAAUUUAUGACAUACU --------------------.....(((((((((((((...........((((......))))((((((-(((..............)))))))))......))))))))))))) ( -26.84, z-score = -4.02, R) >droAna3.scaffold_13266 4567208 94 + 19884421 --------------------GGAAAAGUGUGUCACGAAAUACAUUUUAUUGUCUUAUUUGGUUUUUUUA-GCAUUGUGUACUUUGACGGCGAGAAAACAAAAUUUAUGACAUACU --------------------.....(((((((((..((..(((......)))........((((((((.-((...((........)).))))))))))....))..))))))))) ( -18.80, z-score = -1.16, R) >dp4.chr3 6934857 94 + 19779522 --------------------GGAAAAGUGUGUCAUGAUAUACAUUUUAUUGUUUUAUUUGCCAUUUCUGUGCAAUGUACAUAUAGUCGGCGAGAAAACAA-AUGUAUGACAUACU --------------------.....(((((((((.....((((((....((((((.(((((((((..(((((...)))))...))).)))))))))))))-)))))))))))))) ( -27.20, z-score = -3.38, R) >droPer1.super_2 7137015 94 + 9036312 --------------------GGAAAAGUGUGUCAUGAUAUACAUUUUAUUGUUUUAUUUGCCAUUUCUGUGCAAUGUACAUAUAGUCGGCGAGAAAACAA-AUGUAUGACAUACU --------------------.....(((((((((.....((((((....((((((.(((((((((..(((((...)))))...))).)))))))))))))-)))))))))))))) ( -27.20, z-score = -3.38, R) >consensus ____________________GGAAAAGUGUGUCAUGAAAUACAUUUUAUUGUCUUAUUUGGCAUUUUUG_GCCUUGUGUACUUUGACGGCGAGAAAACAAAAUUUAUGACAUACU .........................(((((((((((((.....((((.(((((..................................))))).)))).....))))))))))))) (-12.87 = -13.93 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:59 2011