| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,083,483 – 6,083,573 |
| Length | 90 |
| Max. P | 0.671616 |
| Location | 6,083,483 – 6,083,573 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 75.76 |
| Shannon entropy | 0.45003 |
| G+C content | 0.59479 |
| Mean single sequence MFE | -28.98 |
| Consensus MFE | -14.89 |
| Energy contribution | -17.12 |
| Covariance contribution | 2.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.671616 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6083483 90 - 21146708 --------CUGGCGGGGGGUCUAAUUAAUACGACCUCCCACCUACAGCCACCCACCGCCCAGAACAACCCACAACCACCUGCUGGUGUGGCACACUUA --------..((.((((((((..........)))))))).))....(((((..((((..(((................))).)))))))))....... ( -29.79, z-score = -1.90, R) >droPer1.super_2 7120670 86 - 9036312 UUAGCCGGGGGGGAGGGGGUCUAAUUAAUACACCCGAACACAGCGAGCAUCCCACAAACAUAGCAUACUUGCACGCCACACCAAGC------------ ......((.(((((..((((.((.....)).)))).......(....).)))).........(((....))).).)).........------------ ( -17.30, z-score = 0.81, R) >droEre2.scaffold_4929 18346018 90 + 26641161 --------CUGGCGGGGUGUCUAAUUAAUACGACCUCCCACCACCAGCCACCCACCACCCAGCACCACCCACAACCACCUGCUGGUGGGGCACACUUA --------.(((.((((.(((..........))).)))).)))...(((.....(((((.((((...............))))))))))))....... ( -27.06, z-score = -0.75, R) >droYak2.chr2L 18708872 90 - 22324452 --------CUGGCGGGGGGUCUAAUUAAUACGACCUCCCACCUCCAGCCACCCACCUCCCAGCCCCAUCCACAACCACCUGCUGGUGAGGCACACUUA --------..((.((((((((..........)))))))).))............(((((((((.................))))).))))........ ( -30.73, z-score = -2.54, R) >droSec1.super_1 3689975 90 - 14215200 --------CUGGCGGGGGGUCUAAUUAAUACGACCUCCCACCUCCAGCCACCCAGUGCCCAGAACCACCCACAACCACCUGCUGGUGUGGCACACUUA --------..((.((((((((..........)))))))).))....((((((((((........................))))).)))))....... ( -33.56, z-score = -2.30, R) >droSim1.chr2R 4705981 90 - 19596830 --------CUGGCGGGGGGUCUAAUUAAUACGACCUCCCACCUCCAGCCACCCAGCGCCCAGAACCACCCACAACCACCUGCUGGUGUGGCACACUUA --------..((.((((((((..........)))))))).))....(((((((((((......................)))))).)))))....... ( -35.45, z-score = -3.28, R) >consensus ________CUGGCGGGGGGUCUAAUUAAUACGACCUCCCACCUCCAGCCACCCACCGCCCAGAACCACCCACAACCACCUGCUGGUGUGGCACACUUA ..........((.((((((((..........)))))))).))....(((............(.......).....((((....)))).)))....... (-14.89 = -17.12 + 2.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:57 2011