| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,080,022 – 6,080,118 |
| Length | 96 |
| Max. P | 0.714698 |
| Location | 6,080,022 – 6,080,118 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 84.19 |
| Shannon entropy | 0.28536 |
| G+C content | 0.55788 |
| Mean single sequence MFE | -31.36 |
| Consensus MFE | -22.35 |
| Energy contribution | -24.13 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.714698 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6080022 96 + 21146708 -------------CAAAUAAUAUCAACCACCCGCCCUGUUGGCCGACGCCUACGUCACCGGUGCGGCCAACAUGUCGUAUACUCGAUGUUGCGGUUCGAAACUGUUGCC -------------.................((((...((((((((.((((.........))))))))))))((((((......)))))).))))............... ( -30.60, z-score = -1.84, R) >droAna3.scaffold_13266 4544655 106 + 19884421 CAAUACUUGACGUUGCGGCACAUCAACCCCCCGCCCUGUUGGCCAA---CUACGUCAUCGUUCCGGCCAACUGGUUCGAUGUUCGAAGCUGGCGCUCGAACCUGUUGUA (((((.((((....((((............))))((.(((((((..---..(((....)))...))))))).)).)))).((((((.((....)))))))).))))).. ( -31.70, z-score = -0.94, R) >droEre2.scaffold_4929 18342591 96 - 26641161 -------------CAAACAAUAUCAACCACCCGCCCUGUUGGCCGACGCCUACGUCACCGGUGCGGCCAACAUGUCGUAUACUCGAUGUUGCGGUUCGAAACUGUUGCC -------------....(((((........((((...((((((((.((((.........))))))))))))((((((......)))))).))))........))))).. ( -32.29, z-score = -2.21, R) >droYak2.chr2L 18705176 96 + 22324452 -------------CAAACAAUAUCAACCACCCGCCCCGUUGGCCGACGCCUACGUCACCGGUGCGGCCAACAUGUCGUAUACUCGAUGUUGUGGUUCGAAACUGUUGCC -------------..((((.(.((((((((.......((((((((.((((.........))))))))))))((((((......)))))).)))))).)).).))))... ( -34.60, z-score = -2.91, R) >droSec1.super_1 3686421 96 + 14215200 -------------CAAACAAUAUCAACCACCAGCCCUGUUGGACGACGCCUACGUCACCGGUGCGGCCAACAUGUCGUAUACUCGAUGUUGCGGUUCGAAACUGUUGCC -------------..((((.(.((((((.(((((...))))).....((..(((((....(((((((......)))))))....))))).)))))).)).).))))... ( -26.70, z-score = -0.50, R) >droSim1.chr2R 4702331 96 + 19596830 -------------CAAACAAUAUCAACCACCCGCCCUGUUGGCCGACGCCUACGUCACCGGUGCGGCCAACAUGUCGUAUACUCGAUGUUGCGGUUCGAAACUGUUGCC -------------....(((((........((((...((((((((.((((.........))))))))))))((((((......)))))).))))........))))).. ( -32.29, z-score = -2.21, R) >consensus _____________CAAACAAUAUCAACCACCCGCCCUGUUGGCCGACGCCUACGUCACCGGUGCGGCCAACAUGUCGUAUACUCGAUGUUGCGGUUCGAAACUGUUGCC .................(((((((((((.........((((((((.((((.........))))))))))))((((((......))))))...)))).))...))))).. (-22.35 = -24.13 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:56 2011