Locus 353

Sequence ID dm3.chr2L
Location 2,453,592 – 2,453,693
Length 101
Max. P 0.761666
window483

overview

Window 3

Location 2,453,592 – 2,453,693
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 92.57
Shannon entropy 0.12844
G+C content 0.49527
Mean single sequence MFE -34.48
Consensus MFE -25.98
Energy contribution -26.82
Covariance contribution 0.84
Combinations/Pair 1.04
Mean z-score -2.34
Structure conservation index 0.75
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.61
SVM RNA-class probability 0.761666
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 2453592 101 + 23011544
AGGGGAAACCCCCGUUUGUCCCAUUUCACCACCAGCCAUCGGGCAGGUAGUAAAGAACCUAUAAAUACUGCUAAACUCUGGCUGAAAACUGGAAAACUGAG
.((((....))))((((.(((..((((((((...(((....))).(((((((.............)))))))......))).)))))...))))))).... ( -28.22, z-score =  -1.45, R)
>droSim1.chr2L 2413807 101 + 22036055
AGGGGAAACCCCCGUUUGUCCCAUUUCACGACCAGCCAUCGGGCAGGUAGUAAAGAACCUAUUAAUACUGCUAAACUCUGGCUGAAAACUGGGAAAUUGAG
.((((....)))).....((((((((((.(.((((......(((((.(((((.......)))))...))))).....))))))))))..)))))....... ( -32.20, z-score =  -2.22, R)
>droSec1.super_5 627130 101 + 5866729
AGGGGAAACCCCCGUUUGUCCCAUUUCACGACCAGCCAUCGGGCAGGUAGUAAAGAACCUAUUAAUACUGCUAAACUCUGGCUGAAAACUGGGAAACUGGG
.(((....)))(((....((((((((((.(.((((......(((((.(((((.......)))))...))))).....))))))))))..)))))...))). ( -34.70, z-score =  -2.28, R)
>droYak2.chr2L 2443784 100 + 22324452
AGGGGAAACCCCCGUUUGUCCCAUAU-AUCGCCAGCCAUCGGGCAGGUAGUAAAGAACCUAUUAAUACUGCUAAACUCUGGCUGGAAACUGGGAAACUGAG
.((((....))))(((..(((((...-....(((((((...(((((.(((((.......)))))...)))))......)))))))....)))))))).... ( -35.70, z-score =  -2.80, R)
>droEre2.scaffold_4929 2497792 98 + 26641161
AGGGGAAACCCCCGUUUGUCCCAU---AUCGCCUGCCAUCGGGCAGGUAGUAAAGAGCCUAGUAAUACUGCUAAACUCUGGCUGGAAACUGGGCAACUGGG
.((((....))))......(((((---((..((((((....))))))..)))....(((((((....(.((((.....)))).)...)))))))...)))) ( -41.60, z-score =  -2.96, R)
>consensus
AGGGGAAACCCCCGUUUGUCCCAUUUCACCACCAGCCAUCGGGCAGGUAGUAAAGAACCUAUUAAUACUGCUAAACUCUGGCUGAAAACUGGGAAACUGAG
.((((....))))(((..(((((.........((((((...(((((.(((((.......)))))...)))))......)))))).....)))))))).... (-25.98 = -26.82 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:21 2011