| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,041,942 – 6,042,122 |
| Length | 180 |
| Max. P | 0.676678 |
| Location | 6,041,942 – 6,042,122 |
|---|---|
| Length | 180 |
| Sequences | 14 |
| Columns | 186 |
| Reading direction | reverse |
| Mean pairwise identity | 80.76 |
| Shannon entropy | 0.44166 |
| G+C content | 0.56635 |
| Mean single sequence MFE | -64.15 |
| Consensus MFE | -29.17 |
| Energy contribution | -29.09 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.676678 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6041942 180 - 21146708 GGCCGAAC---UCGGAACGAAUCCUGCAACCGCGAAUGUCACUCCUAGGAAAGCCGCUGAACUACAACCGCGGCAC---CCGCCGCGAUGUUCGCUACCGGCGCCUCCAGAGUCGCCUCUACAACUUCCUGGAGCGGCCGCGCGGCCUGCACGCCAUCUUCUACCAUGUGAUGGUGUAAGUACACU ..(((...---.)))..........(((.(((((...(((.((((.(((((....((.((((......((((((..---..))))))..))))))....((((.((....)).))))........))))))))).)))..)))))..)))((((((((...........))))))))......... ( -68.50, z-score = -2.59, R) >droSim1.chr2R 4671311 180 - 19596830 GGCCGAAC---UCGGAACGAAUCCUGCAACCGCGAAUGUCACUCCUAGGAAAGCCGCUGAACUACAACCGCGGCAC---CCGCCGCGAUGUUCGCUACCGGCGCCUCCAGAGUCGCCUCUACAACUUCCUGGAGCGGCCGCGCGGCCUGCACGCCAUCUUCUACCAUGUGAUGGUGUAAGUACACU ..(((...---.)))..........(((.(((((...(((.((((.(((((....((.((((......((((((..---..))))))..))))))....((((.((....)).))))........))))))))).)))..)))))..)))((((((((...........))))))))......... ( -68.50, z-score = -2.59, R) >droSec1.super_1 3658048 180 - 14215200 GGCCGAAC---UCGGAACGAAUCCUGCAACCGCGAAUGUCACUCCUAGGAAAGCCGCUGAACUACAACCGCGGCAC---CCGCCGCGAUGUUCGCUACCGGCGCCUCCAGAGUCGCCUCUACAACUUCCUGGAGCGGCCGCGCGGCCUGCACGCCAUCUUCUACCAUGUGAUGGUGUAAGUACACU ..(((...---.)))..........(((.(((((...(((.((((.(((((....((.((((......((((((..---..))))))..))))))....((((.((....)).))))........))))))))).)))..)))))..)))((((((((...........))))))))......... ( -68.50, z-score = -2.59, R) >droYak2.chr2L 18675603 180 - 22324452 GGCCGAAC---UCGGAACGAAUCCUGCAACCGCGAAUGUCACUCCUAGGAAAGCCGCUGAACUACAACCGCGGCAC---CCGCCGCGAUGUUCGCUACCGGCGCCUCCAGAGUCGCCUGUACAACUUCCUGGAGCGGCCGCGCGGCCUUCACGCCAUCUUCUACCAUGUGAUGGUGUAAGUACACU (((((...---..(((.....)))......((((...(((.((((.(((((....((.((((......((((((..---..))))))..))))))(((.((((.((....)).)))).)))....))))))))).))))))))))))...((((((((...........))))))))......... ( -69.60, z-score = -2.89, R) >droEre2.scaffold_4929 18313681 180 + 26641161 GGCCGAAC---UCGGAACGAAUCCUGCAACCGCGAAUGUCACUCCUAGGAAAGCCGCUGAACUACAACCGCGGCAC---CCGCCGCGAUGUUCGCUACCGGCGCCUCCAGAGUCGCCUCUACAACUUCCUGGAGCGGCCGCGCGGCCUGCACGCCAUCUUCUACCAUGUGAUGGUGUAAGUACACU ..(((...---.)))..........(((.(((((...(((.((((.(((((....((.((((......((((((..---..))))))..))))))....((((.((....)).))))........))))))))).)))..)))))..)))((((((((...........))))))))......... ( -68.50, z-score = -2.59, R) >droAna3.scaffold_13266 4514082 180 - 19884421 GGCCGAUC---UCGGAAAGAAUCCUGCAACCGCGAAUGUCACUCCUAGGGAAGCCGCUCAACUACAAUCGCGGCAC---CCGCCGCGAUGUUCGCUACCGGCGGCUCCAGAGCCGCCUCUACAACUUCCUGGAGCGACCGCGGGGCCUGCACGCCAUCUUCUACCAUGUUAUGGUGUAAGUAUACU ((((....---..(((.....))).....(((((...(((.((((..((((((..((..(((....((((((((..---..))))))))))).))....(((((((....))))))).......)))))))))).))))))))))))...(((((((...(......)..)))))))......... ( -74.80, z-score = -3.78, R) >dp4.chr3 6890049 178 - 19779522 GGCCAAAC---UCGGAAAGAAACCUGCAACCGCGAAUGUCACUCCUAGGGAAGCCGCUGAACUACAAUCGCGGCUC---UCGCCGCGAUGUUCGUUACCGGCGUCUCCAGAGUCGCCUCUACAACUUCCUGGAGCGUCCGCGCGGCCUGCAUGCCAUCUUUUACCAUGUGAUGGUGUAAGUGCU-- ((((....---..((..((....))....))(((...(.(.((((.(((((.((((.(((...(((.(((((((..---..))))))))))...))).))))......((((....)))).....))))))))).).)..))))))).((((((((((...........))))))....)))).-- ( -65.20, z-score = -2.04, R) >droWil1.scaffold_180569 1361596 180 + 1405142 GGCCCAAU---UCCAAUCGUCUUGUGGAACCGCGAAUGUCCCUUCUAGGAAAACCGCUGCAAUAUAAUCGCGGCAC---ACGCCGCGAUGUCCGUUAUAGACGACUGCAGAGUCGUCUCUAUAACUUCUUGGAGCGUCCACGCGGCCUGCAUGCCAUAUUUUAUCAUGUGAUGGUGUAAGUAAACU ((((....---(((((.........(((...(((....(((......)))....))).........((((((((..---..)))))))).)))(((((((((((((....))))))))..)))))...)))))(((....)))))))((((((((((((........)).)))))))..))).... ( -60.20, z-score = -2.76, R) >droGri2.scaffold_15245 12693931 186 - 18325388 GACCAAACAAAUCGCAACGUUUUCGGCAACCGCGAAUGUCACUCCUAGGGAAGCCGCUGAACUAUAAUCGCGGCACACAUCGCCGCGAUGCGCGCUACCGGCGGAUGCAGAGUCGCCUGUACAACUUUCUGGAGCGACCGCGGGGCUUGCAUGCAAUAUUCUAUCAUGUGAUGGUGUGAGUAUAAC .............(((.((....))((((((.((...(((.((((..((((((((((((.......((((((((.......)))))))).........)))))).(((((......)))))...)))))))))).)))..)).)).)))).))).((((((((((((...)))))).))))))... ( -64.89, z-score = -1.00, R) >droMoj3.scaffold_6496 18967799 185 + 26866924 GACCAAAUAAAUCGCAAAAAUUUCUGCAACCGCGAAUGUCACUCCUAGGGAAGCCGCUGAACUACAAUCGCGGCACACAUCGCCGCGAUGCGCGCUACCGGCGGAUGCAAAGUCGCCUCUACAAUUUUCUGGAGAGACCGCGCGGCCUGCAUGCCAUAUUCUAUCAUGUGAUGGUGUAAGUAGAC- .............(((........)))..(((((...(((.((((.((((.((((((((.....))((((((((.......))))))))))).))).))(((((........)))))...........)))))).)))..))))).(((((((((((...(......)..)))))))..))))..- ( -62.60, z-score = -1.98, R) >droVir3.scaffold_12875 15888128 185 - 20611582 GACCAAAGAAAUCGCAACAAUUUCUGCAACCGCGAAUGUCACUCCUAGGGAAGCCGCUGAACUAUAAUCGCGGCACACAUCGCCGCGAUGCCCGCUACCGGCGGAUGCAAAGUCGGCUCUACAAUUUCUUAGAGCGACCGCGGGGCCUGCAUGCAAUAUUUUAUCAUGUGAUGGUGUAAGUACAA- .((((.((((((.......))))))(((.(((((...(((.(((.(((((((((((((........((((((((.......))))))))((((((.....))))..))..)).))))).......))))))))).))))))))....))).....................))))..........- ( -58.91, z-score = -1.03, R) >droPer1.super_2 7092050 175 - 9036312 GGCCAAAC---UCGGAAAGAAACCUGCAACCGCGAAUGUCACUCCUAGGGAAGCCGCUGAACUACAAUCGCGGCUC---UCGCCGCGAUGUUCGUUACCGGCGUCUCCAGAGUCGCCUCUACAACUUCCUGGAGCGUCCGCGCGGCCUGCAUGCCAUCUUUUACCAUGUGAUGGUGUAAGU----- (((.....---..((.......))((((.(((((...(.(.((((.(((((.((((.(((...(((.(((((((..---..))))))))))...))).))))......((((....)))).....))))))))).).)..)))))..)))).)))..(((.((((((...)))))).))).----- ( -64.70, z-score = -2.26, R) >anoGam1.chr2L 29703122 169 - 48795086 --------------GACCGGCUUGCACGACCACGAAUGUCACUGUUGGGGAAGCCGCUCAACUAUAAUCGCGGCUC---ACGGCGUGAUGCCCGUUAUAGGCGGCUGCAGAGCAGGGUCUACAAUUUUCUCGAGCGGCCCCGAGGCUUCAAAGCGAUUUUCUACCAUGUCUGUGUGUAAGUAUGCC --------------.....(((((((((((...(((.(((....(((((...(((((((..((((((.((.(((((---((...)))).)))))))))))....((((...))))................)))))))))))).(((....)))))).)))......)))...))))))))..... ( -55.30, z-score = 0.48, R) >triCas2.ChLG1X 1422323 173 - 8109244 GGCAAAAA---CGCGGCCGUCUCACACAACCCCGGAUGAGUCUUCUUGGUAGACCGCUCAAUUAUA---GAGCUUC---ACGCCGAGAUGCUCGCUAUCGUCGAAUUCAAAGUCGGGUUUAUAACUUCCUAGAGAGACCUCGGGGGGU---CGCUAUCUUCUACCACAUGAUAGUGUAAGUAACG- .((.....---.((((((((.....))..(((((((.((((..(((((((.....((((.......---))))...---..))))))).)))).........((((((......))))))......)))..(((....))))))))))---)))...........((((....))))..))....- ( -47.90, z-score = -0.02, R) >consensus GGCCAAAC___UCGGAACGAAUCCUGCAACCGCGAAUGUCACUCCUAGGGAAGCCGCUGAACUACAAUCGCGGCAC___CCGCCGCGAUGUUCGCUACCGGCGCCUCCAGAGUCGCCUCUACAACUUCCUGGAGCGGCCGCGCGGCCUGCACGCCAUCUUCUACCAUGUGAUGGUGUAAGUACACU .............................((.((...(.(.((.(((((((.................((((((.......))))))............((((..........))))........))))))))).).)..)).)).....(((((((.............)))))))......... (-29.17 = -29.09 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:51 2011