| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,022,934 – 6,023,034 |
| Length | 100 |
| Max. P | 0.554681 |
| Location | 6,022,934 – 6,023,034 |
|---|---|
| Length | 100 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 70.00 |
| Shannon entropy | 0.61623 |
| G+C content | 0.42747 |
| Mean single sequence MFE | -16.49 |
| Consensus MFE | -9.73 |
| Energy contribution | -9.29 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.31 |
| Mean z-score | -0.39 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.554681 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6022934 100 + 21146708 --------------GCUUGUACUAAUCUCCUCCUGUAUCCUCUUC--CUUGCAGUAUGAAACUUUGGCCAAACUCGCCCGUGCACAUACCCAAGUACGAUGGAAUGCUUCCGUUUG --------------....(((((..........((((........--..))))(((((..((...(((.......))).))...)))))...)))))((((((.....)))))).. ( -17.40, z-score = -1.05, R) >droGri2.scaffold_15245 12668411 116 + 18325388 AAUUCAUUUCAUUUACUAAUACUCACUUUUGCCUCCUUUUAAUUCUUCUUUCAGUAUGAAACUGUGGCCGAAUUCGCCGGUGCAUGUACCAAAAUACGAUGGAAUGCUUCCAUUUG ....(((((((((................(((..((....(((((..((..((((.....)))).))..)))))....)).))).(((......)))))))))))).......... ( -17.50, z-score = -0.50, R) >droMoj3.scaffold_6496 18943260 115 - 26866924 -AACUUUUGCAAUUUAUAAUAUUAUAUUUCUUCUUUUUUGCUGUCUAUUUACAGUAUGAAAUUGUGGCCAAAUUCGCCGGUUCAUAUACCAAAAUAUGAUGGAAUGCUGCCAUUUG -.......(((...(((..((((((((((....((((.((((((......)))))).))))....(((.......)))(((......))).))))))))))..))).)))...... ( -19.80, z-score = -0.71, R) >droVir3.scaffold_12875 15863226 105 + 20611582 -----------AUUUAUCAAAAUACUUAACUAUUUUUGUAUGGUUUAAUUACAGUAUGAAAUUGUGGCCAAAUUCGCCGGUGCAUAUACCAAAAUAUGAUGGAAUGCUGCCAUUCA -----------...(((((.........((...(((..(((.((......)).)))..)))..))(((.......)))((((....))))......)))))(((((....))))). ( -17.00, z-score = 0.70, R) >droPer1.super_2 7073260 101 + 9036312 --------------GCCCCAAAUAAUCACAGCGCUUCCCUCACUCU-UCCACAGUAUGAAACUUUGGCCUAAUUCGCCCGUGCACAUACCCAAGUACGAUGGGAUGCUUCCGUUCG --------------..................((.((((.......-.(((.(((.....))).)))...........(((((..........)))))..)))).))......... ( -17.30, z-score = -0.18, R) >dp4.chr3 6871932 101 + 19779522 --------------GCCCCAAAUAAUCACAGCGUUUCCCUCACUCU-UCCACAGUAUGAAACUUUGGCCCAAUUCACCCGUGCACAUACCCAAGUACGAUGGGAUGCUUCCGUUCG --------------...............((((..((((.......-.(((.(((.....))).)))...........(((((..........)))))..))))))))........ ( -16.50, z-score = -0.27, R) >droWil1.scaffold_180569 1337708 98 - 1405142 -----------AUUUA--ACAACAAUUUUUGUUCUUCUCAUUCUUU-----UAGUAUGAAACUUUGGCCCAAUUCGCCUGUGCAUAUACCAAAAUAUGAUGGAAUGCUGCCAUUCA -----------....(--((((......)))))....((((..(((-----(.(((((..((...(((.......))).))...))))).)))).))))..(((((....))))). ( -13.80, z-score = 0.04, R) >droSim1.chr2R 4651916 99 + 19596830 --------------GCUUGUACUAAUCUCCUCCUGUAUCCUAUUC--CUUGCAGUAUGAAACUUUGGCCAA-CUCGCCCGUGCACAUACCCAAGUACGAUGGAAUGCUUCCGUUUG --------------....(((((..........((((........--..))))(((((..((...(((...-...))).))...)))))...)))))((((((.....)))))).. ( -17.90, z-score = -1.12, R) >droSec1.super_1 3638935 100 + 14215200 --------------GCUUGUCCUAAUCUCCUCCUGUAUCCUAUUC--CUUGCAGUAUGAAACUUUGGCCAAACUCGCCCGUGCACAUACCCAAGUACGAUGGAAUGCUUCCGUUUG --------------(((((..............((((........--..))))(((((..((...(((.......))).))...))))).)))))..((((((.....)))))).. ( -16.10, z-score = -0.63, R) >droYak2.chr2L 18655672 100 + 22324452 --------------GCUUGUACUAAUCACUUUCUGUGUCCUAUUC--CUUGCAGUAUGAAACUUUGGCCGAACUCGCCCGUGCAUAUACCCAAGUACGAUGGAAUACUUCCGUUUG --------------....(((((...(((.....)))........--......(((((......(((.((....)).)))..))))).....)))))((((((.....)))))).. ( -17.60, z-score = -0.55, R) >droEre2.scaffold_4929 18292757 99 - 26641161 --------------GCUUAUACUAAUCUUUUCCUAUGUCCC-UUC--CUUGCAGUAUGAAACUUUGGCCAAACUCGCCCGUGCACAUACCCAAGUACGAUGGAAUGCUUCCGUUUG --------------...........................-...--((((..(((((..((...(((.......))).))...))))).))))...((((((.....)))))).. ( -14.20, z-score = -0.05, R) >droAna3.scaffold_13266 4495721 99 + 19884421 ----------------CUCUACUAAUCCCUGAUUUACAUUCUCUAA-UCCUCAGUAUGAAACUCUGGCCCAAUUCGCCUGUCCACAUACCCAAGUACGAUGGAAUGCUUCCGUUUG ----------------...((((.......((((..........))-))....(((((..((...(((.......))).))...)))))...)))).((((((.....)))))).. ( -12.80, z-score = -0.35, R) >consensus ______________GCUUAUACUAAUCUCCUCCUUUCUCCUAUUCU_CUUGCAGUAUGAAACUUUGGCCAAAUUCGCCCGUGCACAUACCCAAGUACGAUGGAAUGCUUCCGUUUG .....................................................(((((..((...(((.......))).))...)))))........((((((.....)))))).. ( -9.73 = -9.29 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:50 2011