| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,996,430 – 5,996,524 |
| Length | 94 |
| Max. P | 0.779333 |
| Location | 5,996,430 – 5,996,524 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 63.17 |
| Shannon entropy | 0.69857 |
| G+C content | 0.37282 |
| Mean single sequence MFE | -18.90 |
| Consensus MFE | -8.84 |
| Energy contribution | -8.32 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.64 |
| Mean z-score | -0.82 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.779333 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5996430 94 + 21146708 GCGAAGGCACGAGUUUUAUUGUGCGCAAUGUCUGC---CCAAUUUCCCAUUUAUUCGUUAGUUGGGUG---UAACUUUUUGAAGUACAUGCAUAAAUAUG ......((((((......))))))(((......((---((((((..(.........)..))))))))(---((.(((....)))))).)))......... ( -21.80, z-score = -0.83, R) >droSim1.chr2R_random 1792024 94 + 2996586 GCGAAGGCACGAGUUUUAUUGUGCGCAAUGUCUGC---CCAAUUUCCCAUUUAUUCGUUAGUUGGGUG---UAACUUUUUGAAGUACAUACAUACAUAUG ......((((((......))))))...((((.(((---((((((..(.........)..)))))))((---((.(((....)))))))..)).))))... ( -19.50, z-score = -0.33, R) >droSec1.super_1 3612095 94 + 14215200 GCGAAGGCACGAGUUUUAUUGUGCGCAAUGUCUGC---CCAAUUUCCCAUUUAUUCGUUAGUUGGGUG---UAACUUUUUGAAGUACAUACAUACAUAUG ......((((((......))))))...((((.(((---((((((..(.........)..)))))))((---((.(((....)))))))..)).))))... ( -19.50, z-score = -0.33, R) >droYak2.chr2L 18629033 87 + 22324452 GCGAAGGCACGAGUUUUAUUGUGCCCGAUGUCUGC---CCAAUUCCCCAUUUUUGCGUUAGUUGGGUGGUGUAACUUUUUGAAGUACAUU---------- .....(((((((......))))))).((((((..(---((((((..(((....)).)..)))))))..)....((((....)))))))))---------- ( -25.90, z-score = -2.32, R) >droEre2.scaffold_4929 18266101 87 - 26641161 GCGAAGGCACGAGUUUUAUUGUGCGCAAUGUCUGCAGCCCAAUUUCCCAUUUUUUCGUUAGUUGGGUG---UAACUUUUUGAAGUACAUU---------- ......((((((......))))))(((.....))).((((((((..(.........)..))))))))(---((.(((....))))))...---------- ( -20.80, z-score = -1.00, R) >droWil1.scaffold_180700 3270290 85 - 6630534 GCAGGAACACGAGUUUUAUUGUGUGUAUGGCUCAAAAUGUUUGAAAUCAA--AUU-GUUUUUUUUUUUCUAUUACUUCUACGAAAAUG------------ ..(((((((.((((..(((.....)))..)))).....(((((....)))--)))-))))))..(((((............)))))..------------ ( -11.00, z-score = 0.57, R) >droVir3.scaffold_12875 19068604 77 + 20611582 UUAGGGGCAUAAGUUCUAUUGUGCCAUUAGUUGGAAUUUUAUUUAUUUAUUUAUG-GUUUUUGACUUUUCAAUACUCU---------------------- .....(((((((......)))))))....(((((((..(((...(((.......)-))...)))..))))))).....---------------------- ( -13.80, z-score = -1.48, R) >consensus GCGAAGGCACGAGUUUUAUUGUGCGCAAUGUCUGC___CCAAUUUCCCAUUUAUUCGUUAGUUGGGUG___UAACUUUUUGAAGUACAU___________ ..((((((((((......)))))).....................((((.............))))........))))...................... ( -8.84 = -8.32 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:49 2011