| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,978,374 – 5,978,461 |
| Length | 87 |
| Max. P | 0.810353 |
| Location | 5,978,374 – 5,978,461 |
|---|---|
| Length | 87 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 60.61 |
| Shannon entropy | 0.72255 |
| G+C content | 0.39699 |
| Mean single sequence MFE | -19.33 |
| Consensus MFE | -7.78 |
| Energy contribution | -7.18 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.810353 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5978374 87 - 21146708 GUUCAACCUUCACCUUAACGUUAAUCAAAGUUCAAAUU--ACAU--GGGAAUUGCUUGAUUAACUUACAUC-----GGCGUAACGUGUGAGCAAAG---- ((((...............((((((((((((((..((.--..))--..)))))..)))))))))..(((.(-----(......)))))))))....---- ( -16.50, z-score = -0.98, R) >droPer1.super_20 305778 98 + 1872136 UAUCUUCCUUUUGGACAACAUUCUGCAAAGUUUUCGCCAAUAAAGUGGAGAUCAAUUGCAGGAGCCAUAAAUU--UGCAUUGACUUUAUUGCAAAUAAAG .....(((....))).....((((((((.((((((((.......))))))))...)))))))).......(((--((((..........))))))).... ( -22.90, z-score = -1.93, R) >droAna3.scaffold_13266 13834586 96 + 19884421 GUCCUGCCACCACUCGUAGGUUAAUCAAAGUACCUAUU--UCUUGAGGAAAUUGCUUGAUUAGGUUAUGCCUUGGUGGUUUAACGUGUGCGCGAAAAG-- .....(((((((..(((((.((((((((.(((...(((--((.....)))))))))))))))).)))))...)))))))....(((....))).....-- ( -27.90, z-score = -2.19, R) >droEre2.scaffold_4929 18248245 88 + 26641161 GAUCAAGCCUAACCUUAACGUUAAUCAAAGUUCAAAUU--UGCUG-GGGAAUUGCUUGAUUAACUUACGCC-----GCCGUUACGUGUGAGCAAAG---- ((((((((....(((((.((..................--)).))-)))....))))))))..(((((((.-----........))))))).....---- ( -18.27, z-score = -0.48, R) >droYak2.chr2L 18611110 75 - 22324452 UUUCCACCACAACCUGAACGUUAAUCAAAGUUCAAAUU--UCAUG-GGGAAUUGCUUGAUUAACUUACGCC-----GGCAAAG----------------- .((((.(((.....(((((..........)))))....--...))-)))))(((((.(...........).-----)))))..----------------- ( -12.70, z-score = -0.55, R) >droSec1.super_1 3593159 88 - 14215200 GUUCAACCUUCACCUUAACGUUAAUCAAAGUUCAAAUU--ACAUG-GGGAAUUGCUUGAUUAACUUACGAC-----GGCGUAACGUGUGAGCAAAG---- (((((.....(((......((((((((((((((.....--.....-..)))))..)))))))))(((((..-----..))))).))))))))....---- ( -17.70, z-score = -0.75, R) >consensus GUUCAACCUUCACCUUAACGUUAAUCAAAGUUCAAAUU__UCAUG_GGGAAUUGCUUGAUUAACUUACGCC_____GGCGUAACGUGUGAGCAAAG____ ...................((((((((((((((...............)))))..))))))))).................................... ( -7.78 = -7.18 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:43 2011