| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,967,269 – 5,967,359 |
| Length | 90 |
| Max. P | 0.832535 |
| Location | 5,967,269 – 5,967,359 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 65.00 |
| Shannon entropy | 0.46903 |
| G+C content | 0.40000 |
| Mean single sequence MFE | -20.53 |
| Consensus MFE | -8.39 |
| Energy contribution | -9.29 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.832535 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5967269 90 - 21146708 ---------AGUUUAAGAAUCAGUGUAAUACCUUUACACUCGUUUCGAAACAGU----CAUUAAAACGGCCAU-AUAAUCAUGAUUGGCCCACUUUGGCGCCCA- ---------.((((..((((.(((((((.....))))))).))))..)))).((----((.......(((((.-...........))))).....)))).....- ( -23.60, z-score = -3.30, R) >droEre2.scaffold_4929 18237362 105 + 26641161 UUACCGUCAAGUUUAAGAACCUGUGCGAAAUCUUUACACCCGUUUUGAAACAAACAAUCAUUGAAGCGGCAAUAAUCAUGAUUAUUGCUCCAAUUAGGCGCCCCA ....((((..((((.(((((..(((..(.....)..)))..))))).))))..............(.(((((((((....))))))))).).....))))..... ( -21.30, z-score = -1.60, R) >droSec1.super_1 3582232 75 - 14215200 ---------AGUUUAAGAUUCAGUGUAAAACCCUUACAC--------------A----CAUUAAAUCGGCCAU--UAAUAAUGAUUGGCCCACUUUGGCGCCCA- ---------.((..(((.....((((((.....))))))--------------.----.........(((((.--..........)))))..)))..)).....- ( -16.70, z-score = -1.86, R) >consensus _________AGUUUAAGAAUCAGUGUAAAACCUUUACAC_CGUUU_GAAACA_A____CAUUAAAACGGCCAU_AUAAUAAUGAUUGGCCCACUUUGGCGCCCA_ ..........(((.(((.....((((((.....))))))............................(((((.............)))))..))).)))...... ( -8.39 = -9.29 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:42 2011