| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,452,542 – 2,452,638 |
| Length | 96 |
| Max. P | 0.570380 |
| Location | 2,452,542 – 2,452,638 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 68.82 |
| Shannon entropy | 0.56272 |
| G+C content | 0.42515 |
| Mean single sequence MFE | -24.36 |
| Consensus MFE | -14.45 |
| Energy contribution | -15.60 |
| Covariance contribution | 1.15 |
| Combinations/Pair | 1.40 |
| Mean z-score | -0.66 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.570380 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2452542 96 + 23011544 --------------GGCAGUCGUGCAUUCGAUAUCGAGCCAAGUU------CAUUUGAUAUUGAAAAAUAUGGUACUUGU-CGAUCCGAGGAAUUUUCGGGUUGUUCGCCUUGUCGA --------------.(((....)))..((((((.((((((((((.------....(.(((((....))))).).))))).-.((((((((.....)))))))))))))...)))))) ( -26.60, z-score = -0.97, R) >droWil1.scaffold_180703 2979171 117 + 3946847 CAGGGGCACAAUUUGAUACCAAAGUAUUUCGAGUCCGGGGAAUGUGACAAAUAUCUUAAAUGAAAAUUGAUCCUUUUCAUAUAACCCGAUCGACAAUCAAAUAGUUGUACAUAUCAA ...(..(((.(((((((((....)))..((((...((((..((((((.((..(((...(((....))))))..)).))))))..)))).))))...)))))).).))..)....... ( -23.50, z-score = -0.59, R) >droAna3.scaffold_12913 192995 78 - 441482 --------------GAGAGCUAUGCACUUGAUAUC--ACAGAGUU------AAUUUGAUAUGGAAAA------UACUUUU-CG----------CUGUUUGGCUGGACACCAUGUCGA --------------...(((((.(((....(((((--(.......------....))))))(((((.------...))))-).----------.))).))))).(((.....))).. ( -13.50, z-score = 0.43, R) >droEre2.scaffold_4929 2496814 95 + 26641161 --------------GGCAGUCGUGCAUUCGAUAUCGAGCCAAGUU------CAUUUGAUAUUGAAAA-UAUGGUACUCGU-CGAUCCGAGGAAUUUUCGGGUUGUUCGCCUUGUCGA --------------(((..(((((..((((((((((((.......------..))))))))))))..-))))).....(.-(((((((((.....)))))))))..))))....... ( -26.80, z-score = -0.81, R) >droYak2.chr2L 2442771 95 + 22324452 --------------GGCAGUCGUGCAUUCGAUAUCGAGCCAAGUU------CAUUUGAUAUUGAAAA-UAUGGUACUCGU-CGAUCCGAGGAAUUUUCGGGUUGUUCGCCUUGUCGA --------------(((..(((((..((((((((((((.......------..))))))))))))..-))))).....(.-(((((((((.....)))))))))..))))....... ( -26.80, z-score = -0.81, R) >droSec1.super_5 626163 96 + 5866729 --------------GGCAGUCGUGCAUUCGAUAUCGAGCCAAGUU------CAUUUGAUAUUGAAAAAUAUGGUACUUGU-CGAUCCGAGGAAUUUUCGGGUUGUCCGCCUUGUCGA --------------(((....((((.((((((((((((.......------..)))))))))))).......))))..(.-(((((((((.....))))))))).).)))....... ( -26.70, z-score = -0.91, R) >droSim1.chr2L 2412827 96 + 22036055 --------------GGCAGUCGUGCAUUCGAUAUCGAGCCAAGUU------CAUUUGAUAUUGAAAAAUAUGGUACUUGU-CGAUCCGAGGAAUUUUCGGGUUGUUCGCCUUGUCGA --------------.(((....)))..((((((.((((((((((.------....(.(((((....))))).).))))).-.((((((((.....)))))))))))))...)))))) ( -26.60, z-score = -0.97, R) >consensus ______________GGCAGUCGUGCAUUCGAUAUCGAGCCAAGUU______CAUUUGAUAUUGAAAA_UAUGGUACUUGU_CGAUCCGAGGAAUUUUCGGGUUGUUCGCCUUGUCGA ..............((((........((((((((((((...............))))))))))))................(((((((((.....))))))))).......)))).. (-14.45 = -15.60 + 1.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:20 2011