| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,957,529 – 5,957,633 |
| Length | 104 |
| Max. P | 0.717117 |
| Location | 5,957,529 – 5,957,633 |
|---|---|
| Length | 104 |
| Sequences | 12 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 61.14 |
| Shannon entropy | 0.85771 |
| G+C content | 0.41082 |
| Mean single sequence MFE | -20.33 |
| Consensus MFE | -7.91 |
| Energy contribution | -8.24 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.70 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.717117 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5957529 104 + 21146708 -GGCCCCAUGCCA--GGUGCAACCAGGAGAUCAUCCUUGAUCAUCCGUAAG-AAGCUCUCAAAACU---GCGUCCCUUACUGGUUUAUUAAUAAUUCCAUUUCUUUUUUAG -(((.....))).--((((.(((((((((((((....))))).)))(((((-..((.(........---).))..))))))))))))))...................... ( -23.70, z-score = -1.92, R) >droPer1.super_2 6385622 100 + 9036312 -GGCCCCAUGCCA--AAUGCAACCAGGAGAUCAUCCUGGAUCAUCCGUGAGUUGUGUAGUCCUAUU-GUAAACUAAUAAUAAUUUCCAUAAUUCCUUGAUUUAG------- -(((.....))).--.......((((((.....))))))((((...(.((((((((.((...((((-((......))))))..)).))))))))).))))....------- ( -23.40, z-score = -2.35, R) >dp4.chr3 6170748 100 + 19779522 -GGCCUCAUGCCA--AAUGCAACCAGGAGAUCAUCCUGGAUCAUCCGUGAGUUGUGUAGUCCUAUU-GUAAACUAAUAAUCAUUUCCAUAAUUCCUUGAUUUAG------- -(((.....))).--.......((((((.....))))))((((...(.((((((((.((....(((-((......)))))...)).))))))))).))))....------- ( -21.70, z-score = -1.46, R) >droAna3.scaffold_13266 13812892 101 - 19884421 -GGCCCCAUUCCA--GGUGCAAUCAGGAGAUUAUCCUGGAUCAUCCGUAAGUAUU--UAGGAGUUU-----AUGUUUUUGACAGAUUUUAACAAAAGGAUCUUCCAUGUAG -((......((((--((...((((....))))..))))))....)).........--..((((((.-----........)))(((((((......))))))))))...... ( -19.00, z-score = 0.50, R) >droEre2.scaffold_4929 18227309 107 - 26641161 -GGCCCCAUGCCA--GGUGCAACCAGGAGAUCAUCCUGGAUCAUCCGUAAG-UAGAUCAUACGACUCAUGCCACUCUUAGCGGUUAAUUAUUAAUGAAUUGUAUUCUUUAG -(((.....))).--((((...((((((.....))))))..))))......-((((..((((((.(((((((.(.....).))).........)))).))))))..)))). ( -24.90, z-score = -0.73, R) >droYak2.chr2L 18590256 103 + 22324452 -GGCCCCACGCCA--GGUGCAACCAGGAGAUCAUCCUGGAUCAUCCGUAAG-UAGAUCAUAACACU-GUGC--CUCCUACCGGUUAAUUAUUUAUACAUUUU-UUAUUUAG -(((.....)))(--((..((..(((((.....)))))((((...(....)-..)))).......)-)..)--))...........................-........ ( -22.70, z-score = -1.29, R) >droSec1.super_1 3569966 101 + 14215200 -GGCCCCAUGCCA--GGUGCAACCAGGAGAUCAUCCUGGAUCAUCCGUAAG-UAGAUCUCAAAACU---UCGUCUCUUACCGGUUUACUAAUAAUUCAAUUUUUUUAG--- -(((.....))).--((((.((((.(((((((......)))).)))(((((-.((((.........---..))))))))).))))))))...................--- ( -24.10, z-score = -2.31, R) >droSim1.chr2R 4587576 101 + 19596830 -GGCCCCAUGCCA--GGUGCAACCAGGAGAUCAUCCUGGAUCAUCCGUAAG-UAGAUCUCAAAACU---UCCUCCCUUACCGGCUUAUUAAUAAUUCCAUUUUUUUAG--- -........(((.--((((...((((((.....))))))..)))).(((((-..((..........---))....))))).)))........................--- ( -19.30, z-score = -0.55, R) >droWil1.scaffold_180697 565251 102 - 4168966 UGCCUCAACAUCAUAGAUGCAAUCAGGAGAUUAUCCUUGAUCAUCCGUAAGCUAAAACAGGAAAUU-------GUGUAACUAAUUGCUAAAGAGUUUUAUAUUUUCUAG-- (((.((.........)).)))....((((((((....))))).))).............(((((.(-------(((.((((...........)))).)))).)))))..-- ( -15.90, z-score = 0.15, R) >droVir3.scaffold_12875 15038965 98 + 20611582 -GGCCACAUGCCC--GAUGCAAUCAAGAGAUAAUUCUGGAUCAUCCGUAAGCAUG-----GGAGCA-----GCCUGUUCAUAUAGCAAUAUUUACUUUAUUAUCGAUUCAG -(((....(((((--.((((.......(((....)))((.....))....)))).-----)).)))-----)))..................................... ( -19.10, z-score = 0.25, R) >droMoj3.scaffold_6496 18067006 98 - 26866924 -GGCCCCACGCCC--GAUGCAAUCAGGAGGUGAUUCUUGAUCAUCCGUAAGCACU-----GAAUCU-----UCCAAUCAUUUUAUCUAUAUUAAAUUAUUUUUGUGUUCAG -(((.....))).--((((..((((((((....))))))))))))........((-----((((..-----..(((....((((.......))))......))).)))))) ( -16.00, z-score = 0.14, R) >droGri2.scaffold_15245 15064591 99 + 18325388 -GGCCAAAUGCCC--GGUG---UCAAGAGGUCAUCCUGGAUCAUCCGUAAGAAUGAUAAAGAAUCA-----ACAUCUUC-UGCUGCAAUACUCACUUUAUUUUAUUUACAG -(((.....)))(--((((---..((((.((....((..(((((.(....).)))))..)).....-----)).)))).-))))).......................... ( -14.20, z-score = 1.18, R) >consensus _GGCCCCAUGCCA__GGUGCAACCAGGAGAUCAUCCUGGAUCAUCCGUAAG_UAGAUCAUAAAACU_____ACCUCUUACCGGUUCAUUAAUAAUUUAAUUUUUUUUU_AG .(((.....))).............(((((((......)))).)))................................................................. ( -7.91 = -8.24 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:40 2011