| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,950,777 – 5,950,828 |
| Length | 51 |
| Max. P | 0.740345 |
| Location | 5,950,777 – 5,950,828 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 90.39 |
| Shannon entropy | 0.16893 |
| G+C content | 0.35686 |
| Mean single sequence MFE | -13.88 |
| Consensus MFE | -8.92 |
| Energy contribution | -11.62 |
| Covariance contribution | 2.70 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.60 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.740345 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5950777 51 + 21146708 AUUGGGUGGGUCGAUUUUUUGGAGUAAUCCCAAAAAGAUACACUUGAUACA ((..((((..((...((((.(((....))).)))).))..))))..))... ( -15.50, z-score = -2.62, R) >droEre2.scaffold_4929 18220552 51 - 26641161 AUUGGGUGGGUCGAUUUUUUGGAGUAAUCCUCAAAAUAAACACUUGCUUAG ..((((..(((..(((((..(((....)))..)))))....)))..)))). ( -14.30, z-score = -2.91, R) >droYak2.chr2L 18583460 51 + 22324452 AUUGGGUGGGUCGAUUUUGUGGAGUAAUCCUAAAAAUAUACACUUGUUUAG ..((((..(((..(((((..(((....)))..)))))....)))..)))). ( -10.60, z-score = -1.49, R) >droSec1.super_1 3563192 51 + 14215200 AUUGGGUGGGUCGAUUUUUUGGAGUAAUCCUAAAAAUAUACACUUGAUACA ((..((((.....((((((.(((....))).))))))...))))..))... ( -15.10, z-score = -3.37, R) >droSim1.chr2R 4580794 51 + 19596830 AUUGGGUGGGUCGAUUUUUUGGAGUAAUCCUAAAAAUAUACACUGGAUACA (((.((((.....((((((.(((....))).))))))...)))).)))... ( -13.90, z-score = -2.62, R) >consensus AUUGGGUGGGUCGAUUUUUUGGAGUAAUCCUAAAAAUAUACACUUGAUACA ((((((((.....((((((.(((....))).))))))...))))))))... ( -8.92 = -11.62 + 2.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:39 2011