| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,927,489 – 5,927,622 |
| Length | 133 |
| Max. P | 0.983044 |
| Location | 5,927,489 – 5,927,622 |
|---|---|
| Length | 133 |
| Sequences | 5 |
| Columns | 133 |
| Reading direction | reverse |
| Mean pairwise identity | 90.38 |
| Shannon entropy | 0.16942 |
| G+C content | 0.55188 |
| Mean single sequence MFE | -54.94 |
| Consensus MFE | -45.30 |
| Energy contribution | -46.06 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.12 |
| SVM RNA-class probability | 0.983044 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5927489 133 - 21146708 GCACUUGUGGCCGCAAUUCUCUCGGACUGGCUGUUGGAUGGUCUGGGAGGUAAUGAGUGGGGGAUGCCAUUCUCUCAUUACAAUUGCAAAUCUAGCCAGGCACGUGCCGGCUGCAUGUGCUCUGCUUCGGCGG ((((.((..(((((((((((((((((((..(.....)..))))))))))((((((((.(((((...)).))).))))))))))))))...........(((....))))))..)).)))).((((....)))) ( -62.00, z-score = -4.31, R) >droEre2.scaffold_4929 18197999 133 + 26641161 GCACUUGUGGCCGCAAUUCUCUCGGUCUGGCUGCUGGUUGAUUUGCGAGGUAAUAAAUGGGGGAUGCUAUUCUCGCAUUACGAUUGCAAAUCUAGCUAGACACGUGCCGGCUGAAUGUGCUUCGCUUCGGCGG ((((...((((((((.......(((((((((((......(((((((((.(((....(((.((((......)))).))))))..)))))))))))))))))).)))).))))))...))))..(((....))). ( -52.61, z-score = -3.31, R) >droYak2.chr2L 18559763 133 - 22324452 GCACUUGUGGCCGCAAUUCUCUCGGGCUGUCUGUUGGGUGAUCUGGGGGGUAAUAAGUGCGGGAUGGCAUUCUCGCAUUACAAUUGCAAAUCUAGCCAAACACGUGCCGGCUACAUGUGCUCCACUUCGGCGG ((((.((((((((((((((((((((..(..(.....)..)..)))))))......(((((((((......)))))))))..)))))).......(((......).)).))))))).)))).((.(....).)) ( -51.40, z-score = -2.55, R) >droSec1.super_1 3541461 133 - 14215200 GCACUUGUGGCCGCAAUUCUCUCGGACUGGCUGUUGGUUGGCCUGGGAGGUAAUGAGUGGGGGAUGCCAUUCUCGCAUUACAAUUGAAAAUCUAGCCAGGCACGUGCCGGCUGCAUGUGCUCUGCUUUUGCGG ((((.((..(((((...((((((((.(..((.....))..).))))))))((((.((((.((((......)))).))))...))))........))..(((....))))))..)).)))).((((....)))) ( -52.70, z-score = -1.65, R) >droSim1.chr2R 4557516 133 - 19596830 GCACUUGUGGCCGCAAUUCUCUCGGACUGGCUGUUGGUUGGCCUGGGAGGUAAUGAGUGGGGGAUGCCAUUCUCGCAUUACAAUUGCAAAUCUAGCCAGGCACGUGCCGGCUGCAUGUGCUCUGCUUUUGCGG ((((.((..((((((((((((((((.(..((.....))..).)))))))(((((((((((......))))))....)))))))))))...........(((....))))))..)).)))).((((....)))) ( -56.00, z-score = -2.21, R) >consensus GCACUUGUGGCCGCAAUUCUCUCGGACUGGCUGUUGGUUGGUCUGGGAGGUAAUGAGUGGGGGAUGCCAUUCUCGCAUUACAAUUGCAAAUCUAGCCAGGCACGUGCCGGCUGCAUGUGCUCUGCUUCGGCGG ((((.(((((((((....(((((((.((..(.....)..)).)))))))(((((.((((.((((......)))).))))...))))).......))..(((....)))))))))).)))).((((....)))) (-45.30 = -46.06 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:38 2011