| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,922,381 – 5,922,479 |
| Length | 98 |
| Max. P | 0.569401 |
| Location | 5,922,381 – 5,922,479 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 50.52 |
| Shannon entropy | 0.66608 |
| G+C content | 0.29004 |
| Mean single sequence MFE | -12.77 |
| Consensus MFE | -5.33 |
| Energy contribution | -5.67 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.569401 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5922381 98 - 21146708 ACUAAAGAUUCACAUAUUUUGACAAGUUAAAUGUGUUUUUAAAAAAUUC---AAUGACAACAAGAAACAAGGAAAACUUCUGCAAGACCGAGCUUAUAUAC ....(((.(((.....(((((..(((((.....(((((((.........---..........))))))).....)))))...)))))..))))))...... ( -8.41, z-score = 1.19, R) >droYak2.chr4 232900 85 + 1374474 -------------AGUACAUGAAAUGAGUAAUUCAUAAUACAAUGUUAU---AUAAAAAACGAGAAAUAAAACUUAAUUCGGCAAGCCGAAUCUUUUAUAC -------------.(((.(((((........)))))..))).......(---((((((...(((........))).((((((....)))))).))))))). ( -11.50, z-score = -1.40, R) >droEre2.scaffold_4512 1081945 86 + 1286254 ---------------AGUUUGAUGAAGUUGAUUUCCCCUUAUAUUCUUCCAUAAUAAAAACAAUAAAGAAAGCUUGCUUCGGGAAACCGAAGCUUAUAUAC ---------------.((((.((((((...((........))...))).))).....))))..............(((((((....)))))))........ ( -18.40, z-score = -2.67, R) >consensus _____________A_AAUUUGAAAAGAUUAAUUUAUAAUUAAAUAAUUC___AAUAAAAACAAGAAACAAAGCUUACUUCGGCAAGCCGAAGCUUAUAUAC ............................................................................((((((....))))))......... ( -5.33 = -5.67 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:35 2011