| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,914,304 – 5,914,364 |
| Length | 60 |
| Max. P | 0.811907 |
| Location | 5,914,304 – 5,914,364 |
|---|---|
| Length | 60 |
| Sequences | 6 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 72.11 |
| Shannon entropy | 0.55596 |
| G+C content | 0.37249 |
| Mean single sequence MFE | -8.90 |
| Consensus MFE | -3.84 |
| Energy contribution | -4.45 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.811907 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5914304 60 + 21146708 CCGAUUAAUACCAUUAACCGAUAGAUACCAACACUGGUAUUAUGUUCAGACCACAUACUG .((.(((((...))))).))...(((((((....)))))))................... ( -7.40, z-score = -1.12, R) >droAna3.scaffold_13266 6106075 53 + 19884421 CCGAUUAAUACCA------AAAUACCGCAAAAUGUGGUAU-AUGGGCACACUGCAUCUUU ..(((.....(((------..(((((((.....)))))))-.)))((.....)))))... ( -12.90, z-score = -2.06, R) >droYak2.chr2L 18542561 60 + 22324452 GCGAUUAAUACUAUUAAUCGAUAAAUACCAACUCUGGUAUAUUGCCCUGAACACAUAUUG .((((((((...))))))))....((((((....)))))).................... ( -10.60, z-score = -3.35, R) >droEre2.scaffold_4929 18185242 59 - 26641161 -CAAUUAAUACCAUUAACCGAUAAAUACCAACUCUGGUAUUUUGUACAUUAGACGCAUUG -.....................((((((((....)))))))).................. ( -6.50, z-score = -0.98, R) >droSec1.super_1 3528187 55 + 14215200 CCGAUUAAUACCAUUAACCGAUAGAUACCAACUGUGGUAUUAUGCCC-----ACAUACUG .....(((((((((...................))))))))).....-----........ ( -7.51, z-score = -1.21, R) >droSim1.chr2R 4543865 60 + 19596830 CCGAUUAAUACCAUUAACCGAUAGAUACCAACUCUGGUAUUAUACUCAGGCCACAUACUG .((.(((((...))))).))...(((((((....))))))).....(((........))) ( -8.50, z-score = -1.44, R) >consensus CCGAUUAAUACCAUUAACCGAUAAAUACCAACUCUGGUAUUAUGCCCAGACCACAUACUG .......................(((((((....)))))))................... ( -3.84 = -4.45 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:34 2011