| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,906,235 – 5,906,338 |
| Length | 103 |
| Max. P | 0.522711 |
| Location | 5,906,235 – 5,906,338 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 67.76 |
| Shannon entropy | 0.57661 |
| G+C content | 0.35719 |
| Mean single sequence MFE | -23.44 |
| Consensus MFE | -9.24 |
| Energy contribution | -12.58 |
| Covariance contribution | 3.34 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.522711 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5906235 103 - 21146708 AUCUUGGAGCGAUUGACGAAGUACCUAGCUACAUAAAUAUGUAUGUAUG--UGUAUAUUCGAUAUGACUACAUGUGGCUGUUCGAGAAAUUGGAUAAUUGUUUUA ....(((((((((((..........(((((((((...(((((..((((.--...))))...))))).....)))))))))(((((....)))))))))))))))) ( -22.10, z-score = -0.73, R) >droSim1.chr2R_random 1767986 105 - 2996586 AUCUUGGAGCGAUUGACGAAGUGCCCAGCUACAUAAAUAUGUCUGUAUGUAUGUAUAUUCGAUAUGACUACAUGUGGCUGUUCGAGAAAUUGGAUAAUUGUUUCA ....(((((((((((..........(((((((((...((((((.(((((....)))))..)))))).....)))))))))(((((....)))))))))))))))) ( -29.00, z-score = -2.17, R) >droSec1.super_1 3518850 105 - 14215200 AUCUUGGAGCGAUUGACGAAGUGCUCAGCUACAUAAAUAUGUCUGUAUGCAUGUAUAUUCGAUAUGACUACAUGUGGCUGUUCGAGAAAUUGGAUAAUAGUUUCA ....((((((.((((..........(((((((((...((((((.(((((....)))))..)))))).....)))))))))(((((....))))))))).)))))) ( -26.10, z-score = -0.80, R) >droYak2.chr2L 18534393 91 - 22324452 AUCUUCGAGCGAUUGACGAUGUACU--GCUCCCCAGAUAC------------AUAUAUUCCAUAUGACUACAUGUGGCUGUUCGAGAAAUUGGACAAUUGUUUUA ......((((((((....(((((((--(.....))).)))------------)).....(((((((....)))))))..((((((....)))))))))))))).. ( -23.40, z-score = -2.35, R) >dp4.chr3 6120058 78 - 19779522 AUUUUGAGUCAACGUAC-----ACUUGGCUUCAUACAUAUGU--------ACAUAUGUACAAUAUGUACUUAUAAGGUUAACCUAUGGUUU-------------- .....(((((((.(...-----.))))))))..(((((((((--------((....)))).)))))))......(((....))).......-------------- ( -16.60, z-score = -1.27, R) >consensus AUCUUGGAGCGAUUGACGAAGUACUCAGCUACAUAAAUAUGU_UGUAUG_AUGUAUAUUCGAUAUGACUACAUGUGGCUGUUCGAGAAAUUGGAUAAUUGUUUCA .....((((((((((..........(((((((((..((((((........))))))..((.....))....)))))))))(((((....))))))))))))))). ( -9.24 = -12.58 + 3.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:33 2011