| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,903,270 – 5,903,364 |
| Length | 94 |
| Max. P | 0.528755 |
| Location | 5,903,270 – 5,903,364 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 66.26 |
| Shannon entropy | 0.62731 |
| G+C content | 0.53618 |
| Mean single sequence MFE | -30.41 |
| Consensus MFE | -12.65 |
| Energy contribution | -13.43 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.528755 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5903270 94 + 21146708 ACGGAACCCAACCUAUACUUCCAAGUGGCAGGAAGUGAGGUUGACAAGGCGAAC-----AAGGCUGU-UG-UA-GUACUGCA---------AUCGCAACUGGCGGCGACAC ........((((((.(((((((........)))))))))))))....(.((...-----...((.((-((-((-....))))---------)).))......)).)..... ( -29.00, z-score = -0.95, R) >dp4.chr3 6117502 73 + 19779522 AAGGACUCAUGUCCGUAAGCCCAAGUGGC----AGUGGAGCCGCAGGAGCCCCC-----AAGGCUGC-CACUG-ACGUCGAGUG--------------------------- ....(((((((((.....(((.....)))----(((((((((...((....)).-----..)))).)-)))))-)))).)))).--------------------------- ( -28.90, z-score = -2.12, R) >droAna3.scaffold_13266 2634347 109 - 19884421 AAAGAAGUUCCACUGCCAGUCCGAGUGUCAGGAAGUGGACUCGAAAAACUGCAGCCUUGGGGGCUGUGCAGUACGGACUGCAAAGU--AGUUUCGCAAAUGAUUGUGACAU ...........((((((((((((.(.(((........))).).....(((((((((.....)))..)))))).)))))))....))--))).((((((....))))))... ( -34.40, z-score = -1.13, R) >droSim1.chr2R 4532696 95 + 19596830 ACGGAACUCAACCUGUACUUCCAAGUGGCAGGAAGUGAGGUUGACAAGGCGAAC-----AAGGCUGU-UGGUA-GUACUGCA---------AUCGCAACUGGCGGCGACAC .((....(((((((.(((((((........)))))))))))))).....))...-----...(((((-..((.-....(((.---------...)))))..)))))..... ( -31.90, z-score = -1.46, R) >droSec1.super_1 3516014 95 + 14215200 ACGGAACUCAACCUGUACUUCCAAGUGGCAGGAAGUGAGGUUGACAAGGCGAAC-----AAGGCUGU-UGGUA-GUACUGCA---------AUCGCAACUGGCGGCGACAC .((....(((((((.(((((((........)))))))))))))).....))...-----...(((((-..((.-....(((.---------...)))))..)))))..... ( -31.90, z-score = -1.46, R) >droYak2.chr2L 18531467 94 + 22324452 AUGGAACUCGGCCUGUACUUCCAAGUGGCAGGAAGUGAGGUUGACAAGGCGAAC-----AAGGCUGU-UA-UA-GUGCUGCA---------AUCGCAACUGGCGGUGACAC .((..(((((((((.(((((((........))))))))))))))((..((((..-----..(((...-..-..-..)))...---------.))))...))...))..)). ( -28.40, z-score = -0.24, R) >droEre2.scaffold_4929 18174138 102 - 26641161 AUGGAACGCAGCCUGUACUUCCAAGUGGCAGGAAGUGAGGUUGACAAG-CGAAC-----AAGGCUGU-UA-UA-GUACUGCAUAGUAUAGUAUCGCAACUGGCGGUGACAC .......(((((((.(((((((........)))))))..(((....))-)....-----.)))))))-..-..-(((((....))))).(((((((.....))))).)).. ( -28.40, z-score = -0.16, R) >consensus ACGGAACUCAACCUGUACUUCCAAGUGGCAGGAAGUGAGGUUGACAAGGCGAAC_____AAGGCUGU_UA_UA_GUACUGCA_________AUCGCAACUGGCGGCGACAC ........((((((.(((((((........)))))))))))))...................((.((.........)).))...........((((........))))... (-12.65 = -13.43 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:32 2011