| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,892,246 – 5,892,341 |
| Length | 95 |
| Max. P | 0.995839 |
| Location | 5,892,246 – 5,892,341 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 61.87 |
| Shannon entropy | 0.67154 |
| G+C content | 0.45282 |
| Mean single sequence MFE | -31.13 |
| Consensus MFE | -10.69 |
| Energy contribution | -11.23 |
| Covariance contribution | 0.54 |
| Combinations/Pair | 1.56 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.85 |
| SVM RNA-class probability | 0.995839 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5892246 95 + 21146708 CCCCCGACCUAUUCAUGGCCAAAAAAAUUGGCCAGAAUUGUCGGGGGAAUUACACCAGCAGAUUGUCUAUAUGU------CGAACCGAAUUGACAGAGAUU------------ ((((((((..((((.(((((((.....))))))))))).)))))))).................((((...(((------(((......)))))).)))).------------ ( -39.80, z-score = -6.30, R) >droSim1.chr2R 4522736 95 + 19596830 CCCCCGACCUAUUCACGGCCAAAAAAAUUGGCCAGAAUUGUUGGGGGAAUUACACCAGCAGAUUGUCUAUAUGU------CGAACCGAAUUGACAGAGAUU------------ ((((((((..((((..((((((.....)))))).)))).)))))))).................((((...(((------(((......)))))).)))).------------ ( -35.10, z-score = -5.01, R) >droSec1.super_1 3506146 95 + 14215200 CCCCCGACCUAUUCACGGCCAAAAAAAUUGGCAGGAAUUGUUGGGGGAAUUACACCAGCAGAUUGUCUAUAUGU------CGAACCGAAUUGACAGAGAUU------------ ((((((((..((((...(((((.....)))))..)))).)))))))).................((((...(((------(((......)))))).)))).------------ ( -33.90, z-score = -4.27, R) >droYak2.chr2L 18520891 105 + 22324452 -CCCCGAUCUAUUCACGGCCAAAAAA-UUGGCCUCAAAUGUCGGGGGGAUUACACCAGCAGAUUGUCUAUUUGC------CGAACCGAACCGACAUCGCUGACGUCAGAGAUU -(((((((..(((...((((((....-))))))...)))))))))).........((((.(((.(((..((((.------.....))))..))))))))))............ ( -31.70, z-score = -1.77, R) >droEre2.scaffold_4929 18164049 112 - 26641161 -CCCCGACCUAUUCACGGCCAAAAAAGUUGGCCAAAAAUGUCGGGGGAAUUACACCAGCAGAUUGUCCAUAUACAUAUAUCGAACGGAAACCACAUAGCUGACGUCAGAGAUU -(((((((........((((((.....))))))......))))))).........((((......((.((((....)))).))..(....)......))))............ ( -29.44, z-score = -2.17, R) >dp4.chr3 6108611 104 + 19779522 CCUAAUAUGAAAUUAUUGUCGGAG---UUGGUCAGGGUUUU-AUUCGCAUUUUCCUGGGGGGUGAUUUUUGCAUA-CCAUCGACUGAAACUGACUUUGCUGACGUCAGC---- .................(((((..---(..(((..(((...-.....((((..(...)..))))..........)-))...)))..)..)))))...((((....))))---- ( -23.67, z-score = 0.12, R) >droPer1.super_2 6311929 105 + 9036312 CCUAAUAUGAAAUUAUUGUCGGAG---UUGGUCAGGGUUUUUAUUCGCAUUUUCCUGGGGGGUGAUUUUUGCAAA-ACAUCGACUGAAACUGACAUUGCUGACGUCAGC---- ................((((((..---(..(((...(((((((....((((..(...)..)))).....)).)))-))...)))..)..))))))..((((....))))---- ( -24.30, z-score = -0.26, R) >consensus CCCCCGACCUAUUCACGGCCAAAAAA_UUGGCCAGAAUUGUCGGGGGAAUUACACCAGCAGAUUGUCUAUAUGU______CGAACCGAACUGACAUAGCUGACGUCAG_____ ((((((((...(((...(((((.....)))))..)))..)))))))).................................................................. (-10.69 = -11.23 + 0.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:30 2011