| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,888,589 – 5,888,671 |
| Length | 82 |
| Max. P | 0.737467 |
| Location | 5,888,589 – 5,888,671 |
|---|---|
| Length | 82 |
| Sequences | 8 |
| Columns | 86 |
| Reading direction | forward |
| Mean pairwise identity | 83.10 |
| Shannon entropy | 0.35080 |
| G+C content | 0.45998 |
| Mean single sequence MFE | -22.57 |
| Consensus MFE | -13.57 |
| Energy contribution | -14.33 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.737467 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5888589 82 + 21146708 GCUUGGCUUUCCCGUCACACGCUGCGUAUGCGUAAUAAAUAUUUAUGCACUCG---AAUGUUU-GGCAAAGCCUUCAGCAAGUCAG (((.((((((...((((.(((...((..(((((((.......)))))))..))---..))).)-)))))))))...)))....... ( -24.70, z-score = -2.48, R) >droSim1.chr2R 4519136 82 + 19596830 GCUUGGCUUUCCCGUCACACGCUGCGUAUGCGUAAUAAAUAUUUAUGCACUCG---AAUGUUU-GGCAAAGCCUUCAGCAAGUCAG (((.((((((...((((.(((...((..(((((((.......)))))))..))---..))).)-)))))))))...)))....... ( -24.70, z-score = -2.48, R) >droSec1.super_1 3502505 82 + 14215200 GCUUGGCUUUCCCGUCACACGCUGCGUAUGCGUAAUAAAUAUUUAUGCACUCG---AAUGUUU-GGCAAAGCCUUCAGCAAGUCAG (((.((((((...((((.(((...((..(((((((.......)))))))..))---..))).)-)))))))))...)))....... ( -24.70, z-score = -2.48, R) >droYak2.chr2L 18517142 82 + 22324452 GCUUGGCUUUCCCGUCACACGCAGCGUAUGCGUAAUAAAUAUUUAUGCACUCG---AAUGUUU-GGCAAAGCCUUCAGCAAGUCAG (((.((((((...((((.(((...((..(((((((.......)))))))..))---..))).)-)))))))))...)))....... ( -24.70, z-score = -2.60, R) >droEre2.scaffold_4929 18160648 82 - 26641161 GCUUGGCUUUCCCGUCACACGCUGCGUAUGCGUAAUAAAUAUUUAUGCACUCG---AAUGUUU-GGCGAAGCCUUCAGCAAGUCAG (((.(((((...(((((.(((...((..(((((((.......)))))))..))---..))).)-)))))))))...)))....... ( -26.20, z-score = -2.61, R) >droAna3.scaffold_13266 2616001 82 - 19884421 GCUUAGCUUUCCCGUCACACGCUGCGUAUGCGUAAUAAAUAUUUAUGCACUCG---AAUGUUU-GGCGAAGCCUUCAGCAAGUCAG (((..((((...(((((.(((...((..(((((((.......)))))))..))---..))).)-))))))))....)))....... ( -21.90, z-score = -1.57, R) >dp4.chr3 6105545 78 + 19779522 UUUUAGCUUUCCCGUCACACGCGGCGAAUGCGUAAUAAAUAUUUAUGCACUUG---AAUGUUUCGGCGACGCCGACGGCGA----- .........(((((((...((((.(((((((((((.......)))))))....---.....)))).)).))..))))).))----- ( -21.70, z-score = -0.49, R) >droVir3.scaffold_12875 402661 65 + 20611582 -GUUUUUCGCACUGUCACACGCUGCGUAUGCGUAAUAAAUAUUUAUGCACUUGGCCAAAACUUAAG-------------------- -(((((.((((.((.....)).))))..(((((((.......))))))).......))))).....-------------------- ( -12.00, z-score = -0.40, R) >consensus GCUUGGCUUUCCCGUCACACGCUGCGUAUGCGUAAUAAAUAUUUAUGCACUCG___AAUGUUU_GGCAAAGCCUUCAGCAAGUCAG (((..(((((.((...(((.....((..(((((((.......)))))))..)).....)))...)).)))))....)))....... (-13.57 = -14.33 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:29 2011