| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,878,133 – 5,878,245 |
| Length | 112 |
| Max. P | 0.932262 |
| Location | 5,878,133 – 5,878,245 |
|---|---|
| Length | 112 |
| Sequences | 14 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.82 |
| Shannon entropy | 0.65197 |
| G+C content | 0.52275 |
| Mean single sequence MFE | -33.68 |
| Consensus MFE | -17.67 |
| Energy contribution | -17.48 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.932262 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5878133 112 + 21146708 -------GCUGUUCUUUUU-CCCCCUUAAACUAUAUCAGGCGAAGAUGGAUGAGCUGCAGCUCUUCCGUGGCGACACCGUGAUUCUGAAGGGCAAGCGCCGAAAGGAGACGGUGUGCAUC -------(((((.(((..(-((..(((...((.....))...)))..))).)))..))))).........((.(((((((..((((....(((....)))...)))).)))))))))... ( -34.50, z-score = -0.21, R) >droSim1.chr2R 4508845 113 + 19596830 -------GCUAUUCUUUUCGUCGCCUUAAACUAUAUCAGGCGAAGAUGGAUGAGCUGCAGCUCUUCCGUGGCGACACCGUGAUUCUGAAGGGCAAGCGCCGAAAGGAGACGGUGUGCAUC -------(((((.....((.((((((...........)))))).)).(((.((((....)))).)))))))).(((((((..((((....(((....)))...)))).)))))))..... ( -41.80, z-score = -2.04, R) >droSec1.super_1 3492297 113 + 14215200 -------GCUAUUCUCUUCGCCCCCUUAAACUAUAUCAGGCGAAGAUGGAUGAGCUGCAGCUCUUCCGUGGCGACACCGUGAUUCUGAAGGGCAAGCGCCGAAAGGAGACGGUGUGCAUC -------(((((..((((((((................)))))))).(((.((((....)))).)))))))).(((((((..((((....(((....)))...)))).)))))))..... ( -44.19, z-score = -2.70, R) >droYak2.chr2L 18506486 110 + 22324452 -------GCUUUUCUUUUUCUUGCUUCAACCU---UCAGGCGAAGAUGGAUGAGCUGCAGCUCUUCCGUGGCGACACCGUGAUUCUGAAGGGCAAGCGCCGAAAGGAGACGGUGUGCAUC -------((((((((((((..(((((...(((---(((((((.....(((.((((....)))).)))(((....))))))....)))))))..)))))..))))))))).)))....... ( -39.60, z-score = -1.15, R) >droEre2.scaffold_4929 18150471 110 - 26641161 -------GCAUUUCUUUUUCUCGCUUCACCAU---UCAGGCGAAGAUGGAUGAGCUGCAGCUCUUCCGUGGCGACACCGUCAUUCUGAAGGGCAAGCGCCGAAAGGAGACGGUGUGCAUC -------(((..........(((((((.((..---...)).))).(((((.((((....)))).))))).))))(((((((.((((....(((....)))...))))))))))))))... ( -42.30, z-score = -2.11, R) >droAna3.scaffold_13266 2603656 97 - 19884421 -----------------------GCUGUCUCUCUUCCAGGCGAAGAUGGACGAGCUGCAGCUCUUCCGUGGCGACACCGUAAUUCUGAAGGGCAAACGCCGCAAGGAGACAGUCUGCAUC -----------------------(((((((((((((.....))))).(((.((((....)))).)))((((((...((...........)).....))))))...))))))))....... ( -36.90, z-score = -1.59, R) >dp4.chr3 6095385 119 + 19779522 -GCUCUCUCCCCUUUCCCCGCCACCCCUUUCAUUGACAGGCGAAAAUGGACGAGCUGCAGCUUUUCCGCGGCGACACCGUGAUCCUGAAGGGUAAGCGUCGCAAGGAGACCGUGUGCAUU -((.((((((........((((................)))).....(((.((((....)))).)))((((((..(((.(........).)))...))))))..)))))....).))... ( -35.69, z-score = 0.01, R) >droPer1.super_2 6298560 119 + 9036312 -GCUCUCUCCCCUUUCCCCGCCACCCCUUUCAUUGACAGGCGAAAAUGGACGAGCUGCAGCUUUUCCGCGGCGACACCGUGAUCCUGAAGGGUAAGCGUCGCAAGGAGACCGUGUGCAUU -((.((((((........((((................)))).....(((.((((....)))).)))((((((..(((.(........).)))...))))))..)))))....).))... ( -35.69, z-score = 0.01, R) >droWil1.scaffold_180700 5297775 95 + 6630534 -------------------------UCUUUGUUCUCUAGGCGAAAAUGGAUGAGCUGCAGCUUUUCCGUGGCGACACUGUCAUUUUGAAGGGUAAACGCCGUAAGGAAACCGUUUGCAUU -------------------------....(.(((....((((.....(((.((((....)))).)))(((....))))))).....))).)(((((((((....))....)))))))... ( -25.80, z-score = -0.47, R) >droMoj3.scaffold_6496 21763430 85 - 26866924 -----------------------------------UUAGGCGAAAAUGGAUGAGCUACAGCUCUUCCGUGGCGACACUGUCAUUCUGAAGGGCAAACGCCGUAAAGAGACUGUUUGCAUU -----------------------------------....(((((...(((.((((....)))).)))(((....))).(((..(((..(.(((....))).)..))))))..)))))... ( -27.50, z-score = -2.06, R) >droVir3.scaffold_12875 388551 85 + 20611582 -----------------------------------UUAGGCGAAAAUGGAUGAGCUGCAGCUCUUCCGUGGCGACACUGUUAUCCUGAAGGGCAAGCGCCGCAAGGAGACCGUCUGCAUU -----------------------------------.((((((.....(((.((((....)))).)))((((((....(((...((....)))))..))))))..(....))))))).... ( -29.90, z-score = -1.06, R) >droGri2.scaffold_15245 7746028 85 - 18325388 -----------------------------------UUAGGCGAAAAUGGAUGAGCUGCAGCUCUUCCGUGGCGACACCGUCAUUCUGAAGGGCAAGCGACGCAAGGAGACGGUCUGCAUU -----------------------------------...((((.....(((.((((....)))).)))(((....)))))))........((((...(..(....)..)...))))..... ( -27.20, z-score = -0.45, R) >anoGam1.chr2L 31351137 120 - 48795086 GUUUUUCUGUUUUUGUUUGAAAUCAUGUUUUCUUUUUAGGCAAAAAUGGACGAGCUGGAGCUGUUCCGCGGCGACACGGUACUGUUGAAGGGCAAGCGCCGGAAAGAGACGGUCUGCAUC ((((.(((((((((((((((((...........))))))))))))))))).))))((.((((((..(.(((((.....(..((.....))..)...)))))....)..)))).)).)).. ( -37.10, z-score = -1.05, R) >apiMel3.GroupUn 315249020 85 - 399230636 -----------------------------------UCAAGCAAAAAUGGAUGAAUUACAACUUUUCCGAGGAGAUACAGUAUUGUUGAAAGGAAAAAGACGCAAAGAAACUGUAUGCAUU -----------------------------------....((.....((((.((........)).)))).....(((((((.((.(((...(........).))).)).)))))))))... ( -13.40, z-score = -0.90, R) >consensus ________C___U_U________CCUCA_UCU_U_UCAGGCGAAAAUGGAUGAGCUGCAGCUCUUCCGUGGCGACACCGUGAUUCUGAAGGGCAAGCGCCGCAAGGAGACGGUGUGCAUC .......................................(((....((((.((((....)))).))))(((((...((.(........).))....))))).............)))... (-17.67 = -17.48 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:28 2011