| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,822,859 – 5,822,913 |
| Length | 54 |
| Max. P | 0.573236 |
| Location | 5,822,859 – 5,822,913 |
|---|---|
| Length | 54 |
| Sequences | 3 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 97.53 |
| Shannon entropy | 0.03401 |
| G+C content | 0.48765 |
| Mean single sequence MFE | -13.47 |
| Consensus MFE | -13.25 |
| Energy contribution | -13.37 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.573236 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5822859 54 + 21146708 GAGGUCGUUUCCUGGUUGCCAUUGCAUUUGCAGUUGCCGAGCCAGAAGUCAAAU ...........((((((((.(((((....))))).))..))))))......... ( -14.70, z-score = -1.25, R) >droSim1.chr2R 4453168 54 + 19596830 GAGGUCGUUUCCUGGUUGCCAUUGCAUUUGCAGUUGCCGAGCCAGAAGUCAAAU ...........((((((((.(((((....))))).))..))))))......... ( -14.70, z-score = -1.25, R) >droSec1.super_1 3433107 54 + 14215200 GAGGUCGUUUCCUGGUUGCCAUUGCAUUUGCAGUUUCCGAACCAGAAGUCAAAU ...........(((((((..(((((....)))))...).))))))......... ( -11.00, z-score = -0.49, R) >consensus GAGGUCGUUUCCUGGUUGCCAUUGCAUUUGCAGUUGCCGAGCCAGAAGUCAAAU ...........((((((((.(((((....))))).))..))))))......... (-13.25 = -13.37 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:19 2011