| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,811,270 – 5,811,390 |
| Length | 120 |
| Max. P | 0.589634 |
| Location | 5,811,270 – 5,811,390 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.79 |
| Shannon entropy | 0.17449 |
| G+C content | 0.37170 |
| Mean single sequence MFE | -25.88 |
| Consensus MFE | -17.81 |
| Energy contribution | -17.73 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.589634 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5811270 120 + 21146708 CCUAUCCCCCCGCAAACAAUCAAUAAUUAUCCAUUUAGUAAUCAAUAUUAGAUUUUCGAAAAUUCUAUCCAGCACGACAAAUUGCGGUCCUUGUUUGCUGCUGUUUGCGUUCGGGAUAAG ..((((((..((((((((..............((((((((.....))))))))................(((((.(((((..........)))))))))).))))))))...)))))).. ( -29.20, z-score = -3.56, R) >droEre2.scaffold_4929 18083733 115 - 26641161 --CAUUUGA---ACACCAAUCAAUAAUUAUCCGUUUAGUAAUCAAUAUUAGAUUUUCGAAAAUUCUAUCCAGCAAAACAAAUUGCGGCCUUUGUUUGCUGCUGUUUGUAUUCGGGAUAAG --...((((---.......))))...((((((((((((((.....))))))))...((((....((....))....((((((.(((((........))))).)))))).)))))))))). ( -22.10, z-score = -1.43, R) >droYak2.chr2L 18437241 115 + 22324452 --CAUUUCC---CCACCAAUCAAUAAUUAUCCGUUUAGUAAUCAAUAUUAGAUUUUCGAAAAUUCUAUCCGGCAGGACAAAUUGCGGUCCUUGUUUGCAGCUGUUUGUGUUUGUGAUAAG --.......---..............((((((((((((((.....))))))))......((((..((..(((((((((........)))))((....))))))..)).))))).))))). ( -16.20, z-score = 0.82, R) >droSec1.super_1 3421763 118 + 14215200 CCUAUCCCC--GCAAACAAUCAAUAAUUAUCCGUUUAGUAAUCAAUAUUAGAUUUUCGAAAAUUCUAUCCAGCAGGACAAAUUGCGGUCCUUGUUUGCUGAUGUUUGCGUUCGGGAUAAG ..(((((((--(((((((..............((((((((.....))))))))................(((((((((........)))).....))))).))))))))...)))))).. ( -31.40, z-score = -3.52, R) >droSim1.chr2R 4441872 118 + 19596830 CCUAUCCCC--GCAAACAAUCAAUAAUUAUCCGUUUAGUAAUCAAUAUUAGAUUUUCGAAAAUUCUAUCCAGCAGGACAAAUUGCGGUCCUUGUUUGCUGCUGUUUGCGUUCGGGAUAAG ..(((((((--(((((((..............((((((((.....))))))))................(((((((((........)))).....))))).))))))))...)))))).. ( -30.50, z-score = -3.26, R) >consensus CCUAUCCCC__GCAAACAAUCAAUAAUUAUCCGUUUAGUAAUCAAUAUUAGAUUUUCGAAAAUUCUAUCCAGCAGGACAAAUUGCGGUCCUUGUUUGCUGCUGUUUGCGUUCGGGAUAAG ..........................((((((((((((((.....))))))))...((((.........(((((.(((((..........)))))))))).........)))))))))). (-17.81 = -17.73 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:15 2011