| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,794,000 – 5,794,097 |
| Length | 97 |
| Max. P | 0.804477 |
| Location | 5,794,000 – 5,794,097 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 79.33 |
| Shannon entropy | 0.31106 |
| G+C content | 0.31252 |
| Mean single sequence MFE | -21.60 |
| Consensus MFE | -13.23 |
| Energy contribution | -15.35 |
| Covariance contribution | 2.12 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.804477 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5794000 97 - 21146708 CUAUGUAUUUAUUCGAAUAAUAUCAUAGUAACUAUUCUUUUGUGGCAUAGUUGCCAAUAGGCGAAAGUUACCAAGUGAUUUUAGCUUUUUCAUUUAA--------------- .((((...((((....))))...))))((((((.(((.(((((((((....)))).))))).))))))))).((((((...........))))))..--------------- ( -19.10, z-score = -1.70, R) >droSim1.chr2R 4424834 94 - 19596830 CUAUGUAUUUACUCGAAUACUAUCAUAGUAACUA-UCCUUGGUGGCAUAGUUGCCAUUAGGCGAAAGUUAACAAGUGAUUUUAGC--UUUAAUUUAA--------------- ....((((((....)))))).(((((..(((((.-((((((((((((....)))))))))).)).)))))....)))))......--..........--------------- ( -24.90, z-score = -3.13, R) >droSec1.super_1 3404735 94 - 14215200 CUAUGUAUUUACUCGAAUACUAUCAUAGUAACUA-UCCUUGGUGGCAUAGUUGCCAUUAGGCGAAAGUUAACAAGUGAUUUUAGC--UUUCAUUUAA--------------- ..............(((..(((((((..(((((.-((((((((((((....)))))))))).)).)))))....))))...))).--.)))......--------------- ( -25.00, z-score = -3.21, R) >droYak2.chr2L 18419570 112 - 22324452 GUAUGUAUUUAUUCGAAAAAUAUCAUAGUAACUAUCCUUUACCUUCAAAGUUGCCAUUCGGCGAAAGUUAUCAAGUGAUUUUAGCUAGUUAACACUACGAAGUGUCAUUUAA .(((((((((.......))))).))))((((((...((((......))))(((((....))))).)))))).(((((((....(.((((....))))).....))))))).. ( -17.40, z-score = -0.56, R) >consensus CUAUGUAUUUACUCGAAUAAUAUCAUAGUAACUA_UCCUUGGUGGCAUAGUUGCCAUUAGGCGAAAGUUAACAAGUGAUUUUAGC__UUUAAUUUAA_______________ .....................(((((.((((((.((.((((((((((....)))))))))).)).))))))...)))))................................. (-13.23 = -15.35 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:14 2011