| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,791,880 – 5,791,930 |
| Length | 50 |
| Max. P | 0.761882 |
| Location | 5,791,880 – 5,791,930 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 93.80 |
| Shannon entropy | 0.11405 |
| G+C content | 0.45200 |
| Mean single sequence MFE | -12.56 |
| Consensus MFE | -10.70 |
| Energy contribution | -11.18 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.761882 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5791880 50 + 21146708 CGCAGCAUCUAUUUUAUUAGGUAUAUUUUCAGCCAGGGCUGCACCUAAUC .((((((((((......)))))......((.....)))))))........ ( -10.50, z-score = -1.40, R) >droEre2.scaffold_4929 18064350 50 - 26641161 CGCAGCAUCCAUUUUAUUGGCUUUAUUUCCAGCCAGGGCUGCACCUAAUC .(((((..........((((((........)))))).)))))........ ( -14.90, z-score = -2.64, R) >droYak2.chr2L 18417454 50 + 22324452 CGCAGCAUCUGUUUUAUUGGUUUUAUUUCCAGCCAGGGCUGCACCUAAUC .(((((.((((.....((((........)))).)))))))))........ ( -14.20, z-score = -2.37, R) >droSec1.super_1 3402653 50 + 14215200 CGCAUCAUCUAUUUUAUUGGCUUUAUUUCCAGCCAGGGCUGCACCUAAUC .(((.(..........((((((........)))))).).)))........ ( -8.30, z-score = -0.38, R) >droSim1.chr2R 4422730 50 + 19596830 CGCAGCAUCUAUUUUAUUGGCUUUAUUUCCAGCCAGGGCUGCACCUAAUC .(((((..........((((((........)))))).)))))........ ( -14.90, z-score = -2.66, R) >consensus CGCAGCAUCUAUUUUAUUGGCUUUAUUUCCAGCCAGGGCUGCACCUAAUC .(((((..........((((((........)))))).)))))........ (-10.70 = -11.18 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:13 2011