| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,788,864 – 5,788,952 |
| Length | 88 |
| Max. P | 0.718789 |
| Location | 5,788,864 – 5,788,952 |
|---|---|
| Length | 88 |
| Sequences | 7 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 67.32 |
| Shannon entropy | 0.57208 |
| G+C content | 0.44327 |
| Mean single sequence MFE | -18.49 |
| Consensus MFE | -8.23 |
| Energy contribution | -7.56 |
| Covariance contribution | -0.67 |
| Combinations/Pair | 1.71 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.718789 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5788864 88 - 21146708 --CGGCGACGGCCAUUACGUGGUCGCAGCCCCAUACAUACAU----AAGUGUCCAAAAAGACCCAACAAUGUCAACUCCAUUUUAGAGAUCAUA--- --.(((..(((((((...)))))))..)))....((((....----..)))).......(((........)))..(((.......)))......--- ( -18.70, z-score = -1.61, R) >droPer1.super_4 854301 96 + 7162766 CUAUGAUGUGACAAUUACGUGACGAGGCUUCCAUUUCCAUAUCUGACAGAGAAUCAACACAUACAUCAUCCUCAUCGCCAUCGUCAAAGACAUCAU- ..(((((((.((......))((((((((.........((....))...(((...................)))...))).)))))....)))))))- ( -17.51, z-score = -0.43, R) >dp4.chr3 8792458 97 + 19779522 CUAUGAUGUGACAAUUACGUGACGAGGCUUCCAUUUCCAUAUCUGACAGAGAAUCAACACAUACAUCAUCCUCAUCGCCAUCGUCAAAGACAUCAUA .((((((((.((......))((((((((.........((....))...(((...................)))...))).)))))....)))))))) ( -18.71, z-score = -0.93, R) >droSim1.chr2R 4419730 88 - 19596830 --CGGCGACGGCCAUUACGUGGUCGCAGCCCCAUACAUACAU----AAGUGUCCAAAAAGACCCAACAAUGUCAACUCCAUUUUAGAGAUCAUA--- --.(((..(((((((...)))))))..)))....((((....----..)))).......(((........)))..(((.......)))......--- ( -18.70, z-score = -1.61, R) >droSec1.super_1 3399668 88 - 14215200 --CGGCGACGGCCAUUACGUGGUCGCAGCCCCAUACAUACAU----AAGUGUCCAAAAAGACCCAACAAUGUCAACUCCAUUUUAAAGAUCAUA--- --.(((..(((((((...)))))))..)))....((((....----..)))).......(((........))).....................--- ( -17.50, z-score = -1.39, R) >droYak2.chr2L 18414459 80 - 22324452 --CGGCGACGGCCAUUACGUGGUCGCAGCC--------ACAU----AAGUGUCCAAAAAGGCCCAACAAUGUCAACUCCAUUUUUAAGAUCAUA--- --.(((..(((((((...)))))))..)))--------((((----...((.((.....))..))...))))......................--- ( -18.20, z-score = -1.13, R) >droEre2.scaffold_4929 18061386 80 + 26641161 --CGGCUAUGGCCAUUACGUGGUCGCAGCC--------ACAU----AAGUGUCCAAAAAGAUCUAACAAUGUCAACUCCAUUUUAAAGAUCAUA--- --.((((.(((((((...))))))).))))--------....----.............(((((...((((.......))))....)))))...--- ( -20.10, z-score = -2.91, R) >consensus __CGGCGACGGCCAUUACGUGGUCGCAGCCCCAUACAUACAU____AAGUGUCCAAAAAGACCCAACAAUGUCAACUCCAUUUUAAAGAUCAUA___ ....(((((.((......)).)))))....................................................................... ( -8.23 = -7.56 + -0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:10 2011