| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,769,015 – 5,769,110 |
| Length | 95 |
| Max. P | 0.653204 |
| Location | 5,769,015 – 5,769,110 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 69.44 |
| Shannon entropy | 0.51497 |
| G+C content | 0.37770 |
| Mean single sequence MFE | -18.91 |
| Consensus MFE | -8.33 |
| Energy contribution | -9.79 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.653204 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5769015 95 - 21146708 ACGACCUGCUGUCGAAGCUGUUUAAACAGCAAAAUAUGAUAUGAAAUUAUCACCCUAUUUCCGACUUACUGUUGACGUAGACACAGUUCUGUAAA------------------------- ..((.(((.((((((((((((....)))))......(((((......)))))......)))((((.....)))).....))))))).))......------------------------- ( -21.70, z-score = -2.79, R) >droSim1.chr2R_random 1757722 95 - 2996586 ACGAUCUGCUGUCGAAGCUGUUUAAACAGCCAAAUAUGAUAUGAAAUUAUCACCCUAUUUCCGACUUACUGUUGACGUAGACACAGUUCUGUAAA------------------------- ..((.(((.((((((((((((....)))))......(((((......)))))......)))((((.....)))).....))))))).))......------------------------- ( -20.90, z-score = -2.38, R) >droSec1.super_1 3379795 95 - 14215200 ACGAUCUGCUGUCGAAGCUGUUUAAACAGCCAAAUAUGAUAUGAAAUUAUCACCCUAUUUCCGACUUACUGUUGACGUAGACACAGUUCUGUAAA------------------------- ..((.(((.((((((((((((....)))))......(((((......)))))......)))((((.....)))).....))))))).))......------------------------- ( -20.90, z-score = -2.38, R) >droYak2.chr2L 18394496 93 - 22324452 GCGAUCUGCUGUCGAAGCUGUUUAAACAGCCAAAUAUGAUAC--AAUUAUCACACUAUUUCCGACUCGCUGUUGACGUAGACACAGUUCUGUAAA------------------------- ..((.(((.((((((((((((....)))))......(((((.--...)))))......)))((((.....)))).....))))))).))......------------------------- ( -19.80, z-score = -0.98, R) >droEre2.scaffold_4929 18041710 83 + 26641161 ACAAUCUGCUAUCGAAGCUGUUUAAACAGCCAAAUAUGAUAC--AAUUAUCACUCUACUUCCGACUCACUGUUGACGUAGGCACA----------------------------------- ......(((.......(((((....)))))......(((((.--...)))))..((((...((((.....))))..)))))))..----------------------------------- ( -15.10, z-score = -1.51, R) >dp4.chr3 8777609 117 + 19779522 --GCCGUCUCGUCGAAGCUGUUUAAAUAAACGAAUUUGAUAC-AAAUUUCCAACUUAUAUCCAAAUAAAUGUUGACGCAGACACUAUAAAGCAUACACACAGCAAUAACAGCCAUGUAUU --...((((((((((....((((....))))(((((((...)-))))))......................)))))).))))..............(((..((.......))..)))... ( -17.00, z-score = -0.69, R) >droPer1.super_4 837967 117 + 7162766 --GCCGUCUCGUCGAAGCUGUUUAAAUAAACGAAUUUGAUAC-AAAUUUCCAACUUAUAUCCAAAUAAAUGUUGACGCAGACACUAUAAAGCAUACACACAGCAAUAACAGCCAUGUAUU --...((((((((((....((((....))))(((((((...)-))))))......................)))))).))))..............(((..((.......))..)))... ( -17.00, z-score = -0.69, R) >consensus ACGAUCUGCUGUCGAAGCUGUUUAAACAGCCAAAUAUGAUAC_AAAUUAUCACCCUAUUUCCGACUUACUGUUGACGUAGACACAGUUCUGUAAA_________________________ .....((((.(((((.(((((....)))))......(((((......)))))...................)))))))))........................................ ( -8.33 = -9.79 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:09 2011