| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,753,029 – 5,753,087 |
| Length | 58 |
| Max. P | 0.946387 |
| Location | 5,753,029 – 5,753,087 |
|---|---|
| Length | 58 |
| Sequences | 3 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 95.40 |
| Shannon entropy | 0.06333 |
| G+C content | 0.29310 |
| Mean single sequence MFE | -6.40 |
| Consensus MFE | -6.84 |
| Energy contribution | -6.40 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.09 |
| Structure conservation index | 1.07 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.946387 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5753029 58 - 21146708 UCAACAAGCAACAAAAUUGUCCGUUUGUUUAUGUUACUAGUUUUUUGUUUAAUUUUUC ..(((((((.(((....)))..)))))))............................. ( -5.60, z-score = -0.43, R) >droSim1.chr2R 4391192 58 - 19596830 UCAGCAAGCAACAAAAUUGUCCGUUUGUUUAUGUUCCUAGUUUUUUGUUUAAUUUUUC ..(((((((.(((....)))..)))))))............................. ( -5.60, z-score = -0.97, R) >droSec1.super_1 3365461 58 - 14215200 UCAGCAAGCAACAAAAUUGUCCGCUUGUUUAUGUUCCUCGUUUUUUGUUUAAUUUUUC ..(((((((.(((....)))..)))))))............................. ( -8.00, z-score = -1.89, R) >consensus UCAGCAAGCAACAAAAUUGUCCGUUUGUUUAUGUUCCUAGUUUUUUGUUUAAUUUUUC ..(((((((.(((....)))..)))))))............................. ( -6.84 = -6.40 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:08 2011