| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,445,013 – 2,445,123 |
| Length | 110 |
| Max. P | 0.771877 |
| Location | 2,445,013 – 2,445,123 |
|---|---|
| Length | 110 |
| Sequences | 11 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 69.67 |
| Shannon entropy | 0.64538 |
| G+C content | 0.42721 |
| Mean single sequence MFE | -28.66 |
| Consensus MFE | -10.92 |
| Energy contribution | -11.19 |
| Covariance contribution | 0.27 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.771877 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2445013 110 + 23011544 --CUUUCGCUUGUUUUGUGGUUUUUUGCCACCUCGAGCUGCGAAUUUAUGGCGACAAGGUGACAGAUUCUC--AAACGAUUUUAUCAUCUCGGCAACAAA--GUUGGCAAUAUCGU --..(((((..((((.(((((.....)))))...)))).)))))....((.((((.((((((.(((.((..--....)).))).)))))).(....)...--)))).))....... ( -29.60, z-score = -1.44, R) >droSim1.chr2L 2404388 110 + 22036055 --CUUUGGCUUGUUUGGGGGUGUUUUGCCACCUCGAGCUGCGAAUUUAUGGCGACAAGGUGACAGAUUCUC--AAACGAUUUUAUCAUCUUGGCAACAAA--GUUGGCAAUAUCGU --....((((((...((.(((.....))).)).))))))((.(((((.((....((((((((.(((.((..--....)).))).))))))))....))))--))).))........ ( -32.10, z-score = -1.55, R) >droSec1.super_5 618621 110 + 5866729 --CUUUCGCUUGUUUUGUGGUUUUUUGCCACCUCGAGCUGCGAAUUUAUGGCGACAAGGUGACAGAUUCUC--AAACGAUUUUAUCAUCUUGGCAACAAU--GUUGGCAAUAUCGU --..(((((..((((.(((((.....)))))...)))).)))))....((.(((((.(((((.(((.((..--....)).))).)))))(((....))))--)))).))....... ( -31.00, z-score = -1.97, R) >droYak2.chr2L 2434061 110 + 22324452 --CUUUCGCUUGUUUUGUGGUUUUUUGCCACCUCGAGUUGCGAAUUUAUGGCGACAAGGUGACAGAUUCUC--AAACGAUUUUAUCAUCUUGGCAACAAA--GUUGGCAAUAUCGU --.....(((((....(((((.....)))))..)))))(((.(((((.((....((((((((.(((.((..--....)).))).))))))))....))))--))).)))....... ( -30.00, z-score = -1.76, R) >droEre2.scaffold_4929 2489076 110 + 26641161 --CUUUCGCUUGUUUUGUGGUUUUUUGCCACCUCGAGCUGCGAAUUUAUGGCGACAAGGUGACAGAUUCUC--AAACGAUUUUAUCAUCUUGGCAACAAA--GUUGGCAAUAUCGU --.....(((((....(((((.....)))))..)))))(((.(((((.((....((((((((.(((.((..--....)).))).))))))))....))))--))).)))....... ( -32.40, z-score = -2.39, R) >droAna3.scaffold_12913 184309 102 - 441482 GUUACAUUUGCUUUGUGGUUUCGCACUGAAUCCAAACUGUUGAAUUUAUGGCGACAAGGUGACAGAUUCUC--AAACGAUUUUAUCAUCUUGGCAACAAAGUGU------------ .........(((((((.((.((((..(((((.(((....))).)))))..))))((((((((.(((.((..--....)).))).)))))))))).)))))))..------------ ( -27.20, z-score = -1.99, R) >dp4.chr4_group4 1709824 103 + 6586962 GUUGCGUUUGCUUUGUGGUUUU-CUCUGCGGUUGGGCGGC-GAAUUUAUGGCGACAAGGUGACAGAUUCUC--AAACGAUUUUAUCAUCUUGGCAACACAACUUGGC--------- ((((.(((.((.((((.((.((-(.((((......)))).-)))...)).))))((((((((.(((.((..--....)).))).))))))))))))).)))).....--------- ( -30.80, z-score = -2.02, R) >droPer1.super_10 713248 102 + 3432795 GUUGCGUUUGCUUUGUGGUUU--CUCUGCGGUUGGGCGGC-GAAUUUAUGGCGACAAGGUGACAGAUUCUC--AAACGAUUUUAUCAUCUUGGCAACAAAACUUGGC--------- (((((..(((((..((((.((--(.((((......)))).-))).)))))))))((((((((.(((.((..--....)).))).)))))))))))))..........--------- ( -31.30, z-score = -2.24, R) >droWil1.scaffold_180703 2968822 101 + 3946847 --------GUCUUUGCGUUGCGGUUUUUGGGUCUGUGUUUCGAAUUUAUAGCGACAAGGUGACAGAUUCUCUCAAACAAUUUUAUCAUCUUGGCAACAAU--GUUUCCACC----- --------....(((((((((.(..((((((.......))))))..)...)))))(((((((.(((..............))).))))))).))))....--.........----- ( -18.34, z-score = 0.59, R) >droVir3.scaffold_12963 9798117 105 + 20206255 --------CUUCUG-CUUUUUGUGGUUACGCUCCGGCCAGAGAAUUUAUGGCGACAAGGUGACAGAUUCUC--AACCGAUUUUAUCAUCUUGGCAACAGGCAAUUGGCAACAUUGU --------....((-((..((((.(((..((....((((.........))))..((((((((.(((.((..--....)).))).)))))))))))))..))))..))))....... ( -27.80, z-score = -1.04, R) >droMoj3.scaffold_6500 30897854 98 - 32352404 --------CUUCUGGUUUUUUGUGGCUGGGC--------GUGAAUUUAUGGCGACAAGUUGACAGAUUCUC--AAAUGAUUUUAUCAUCUUGGCAACAGCCGAUUGGCAACAAUGU --------..............(((((((.(--------(((....)))).)..((((.(((.(((.((..--....)).))).))).))))....))))))((((....)))).. ( -24.70, z-score = -0.65, R) >consensus __CUUUCGCUUGUUGUGUUGUUUUUUUCCACCUCGAGCUGCGAAUUUAUGGCGACAAGGUGACAGAUUCUC__AAACGAUUUUAUCAUCUUGGCAACAAA__GUUGGCAAUAUCGU ..................................................((..((((((((.(((.((........)).))).))))))))))...................... (-10.92 = -11.19 + 0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:16 2011