| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,705,494 – 5,705,597 |
| Length | 103 |
| Max. P | 0.563527 |
| Location | 5,705,494 – 5,705,597 |
|---|---|
| Length | 103 |
| Sequences | 11 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 67.20 |
| Shannon entropy | 0.67275 |
| G+C content | 0.56795 |
| Mean single sequence MFE | -29.14 |
| Consensus MFE | -13.97 |
| Energy contribution | -15.19 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.40 |
| Mean z-score | -0.62 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.563527 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5705494 103 - 21146708 AGCUGGCCGUGAAUCGCUCUCCACACUUUGCUCUUU----GAUCCCCGUCUCUUG--------CUUAUCCUUCUGGCCCGCGUCGUGGUGGAAGUGAUGCAAGUGCUCGUGGCUG ....((((((((((((((.(((((((..(((.....----(((....)))....(--------((.........)))..)))..)).)))))))))))((....)))))))))). ( -28.20, z-score = -0.04, R) >droSim1.chr2R 4343074 103 - 19596830 AGCUGGCCGUGAAUCGCUCUCCACACUUUGCUCUUU----GAUCCCCGUCUCUUG--------CUUAUCCUUCUGGCCCGCGUCGUGGUGGAAGUGAUGCAAGUGCUCGUGGCUG ....((((((((((((((.(((((((..(((.....----(((....)))....(--------((.........)))..)))..)).)))))))))))((....)))))))))). ( -28.20, z-score = -0.04, R) >droSec1.super_1 3314452 103 - 14215200 AGCUGGCCGUGAAUCGCUCUCCACACUUUGCUCUUU----GAUCCCCGUCUCUUG--------CUUAUCCUUUUGGCCCGCGUCGUGGUGGAAGUGAUGCAAGUGCUCGUGGCUG ....((((((((((((((.(((((((..(((.....----(((....)))....(--------((.........)))..)))..)).)))))))))))((....)))))))))). ( -28.20, z-score = -0.10, R) >droYak2.chr2L 18330760 103 - 22324452 AGCUGGCCGUGAAUCGCUCUCCACACUUUGCUCUUU----GAUCCCCGCCUCCUG--------CUUCUCCUUCUUGCCGGCGUCGUGGUGGAAGUGAUGCAAGUGCUCGUGGCUG ....((((((((((((((.(((((((..((((....----((.....((.....)--------).......)).....))))..)).)))))))))))((....)))))))))). ( -27.60, z-score = 0.49, R) >droEre2.scaffold_4929 17980405 103 + 26641161 AGCUGGCCGUGAAUCGCUCUCCACACUUUGCUCUUU-----GAUCCCCUCCUCAU-------UUUUCUCCUUCUUGCCCGCAUCGUGGUGGAAGUGGUGCAAGUGCUCGUGGCUG ....((((((((((((((.(((((((..(((.....-----((............-------.........))......)))..)).)))))))))))((....)))))))))). ( -25.00, z-score = 0.13, R) >dp4.chr3 11007048 100 + 19779522 AAUCGGCCGCGAAUCGCUUUCCAUACCU-UCUGGAC-----CGCUCCCUCCCUGG-------UCCUCUCCUUUU--GCUGGGUCGUGAUGGAAGUGAUGCAAGUGCUCGUGGCUG ...((((((((((((((((.((((((..-...((((-----((.........)))-------)))...(((...--...)))..)).)))))))))))((....))))))))))) ( -36.90, z-score = -2.99, R) >droPer1.super_4 4506370 100 + 7162766 AAUCGGCCGCGAAUCGCUUUCCAUACCU-UCUGGAC-----CGCUCCCUCCCUGG-------UCCUCUCCUUUU--GCUGGGUCGUGAUGGAAGUGAUGCAAGUGCUCGUGGCUG ...((((((((((((((((.((((((..-...((((-----((.........)))-------)))...(((...--...)))..)).)))))))))))((....))))))))))) ( -36.90, z-score = -2.99, R) >droWil1.scaffold_180701 3693035 97 - 3904529 AGCCGGCCGCGAAUCGCUUUCCACACUU-UCCUUAU----------CGGUCCCAG-------CCGCCUCCCUUUUCGCCGCAUCGUGAUGGAAAUGAUGCAAGUGCUCGUGACUG ...(((.(((((..(((((.........-.......----------((((....)-------)))..............(((((((.......)))))))))))).))))).))) ( -23.90, z-score = 0.14, R) >droVir3.scaffold_12875 6040822 115 - 20611582 AGCCGGCCGCGAAUCGCUUUCCACAUCUCUCUGUUCAUUAUCUCUAUUUCCCGAGCCAUCCCUGUCCUUGCCUUUUUCCGCAUCAUGAUGGAAGUGAUGCAAAUGCUCAUGGCUA (((((...(((.(((((((......................(((........)))(((((..((....(((........))).)).)))))))))))).....)))...))))). ( -23.40, z-score = 0.15, R) >droMoj3.scaffold_6496 2864331 103 + 26866924 AAGCGGCCGUGAGUCGCUUUCCAAACUU-UCUGUAC----GUGUCGCAUUCCCAG-------UAUUUUCGUUCUUGGUCGGAUCGUGGUGGAAAUGAUGCAAAUGCUCAUGGCUA ....((((((((((..........((..-...))..----.(((..((((.(((.-------(((.((((........))))..))).))).))))..)))...)))))))))). ( -28.30, z-score = -0.52, R) >anoGam1.chrX 17798421 83 + 22145176 ------------CACGUUCGUCGGACGCUGACUGUU--------UGCCUCCCU----------CGCCAUCGCCCGGCCCGCACC--GGCCGACGAGGUGCAGAUAGUAGUGGUGG ------------((((((.....)))((((.(((((--------(((...(((----------((...(((.((((......))--)).)))))))).)))))))))))).))). ( -33.90, z-score = -1.03, R) >consensus AGCCGGCCGUGAAUCGCUCUCCACACUUUGCUCUUU_____AUCCCCGUCCCUAG________CUUCUCCUUCUUGCCCGCGUCGUGGUGGAAGUGAUGCAAGUGCUCGUGGCUG ....((((((((((((((.(((((((...((................................................))...))).))))))))))((....)))))))))). (-13.97 = -15.19 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:05 2011