| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,700,057 – 5,700,171 |
| Length | 114 |
| Max. P | 0.551021 |
| Location | 5,700,057 – 5,700,171 |
|---|---|
| Length | 114 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 78.09 |
| Shannon entropy | 0.50516 |
| G+C content | 0.55821 |
| Mean single sequence MFE | -37.98 |
| Consensus MFE | -17.11 |
| Energy contribution | -17.17 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.551021 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 5700057 114 - 21146708 AGCUUCCUUGAAGAACUUCGGUGACAAGACCGCCAACCUCUUCAGCAAGAAGAAGGAUGAGGCCGAGAAGCUGGCCAACGAGAAGGCUGCCGAGGCCCAGAAGCU---AGCCGAGGA ....((((((.....((((((((.......))))..(((((((.....)))).))).((.((((..(..((.((((........)))))))..))))))))))..---...)))))) ( -37.50, z-score = -0.69, R) >droAna3.scaffold_13266 12970513 114 - 19884421 AGCAUCCUUGAAGAACUUUGGCGACAAGACGGCCAAUCUGUUCAGCAAGAAGAAGGAUGAGGCUGAGAAGCUGGCCAACGAGAAGGCUAACGAGGCCCAGAAGCU---GGCCGAGGA ..((((((((..((((.(((((.........)))))...))))..))......)))))).((((....))))(((((.(.....((((.....)))).....).)---))))..... ( -35.90, z-score = -0.83, R) >droMoj3.scaffold_6496 2856625 114 + 26866924 AGCCUCUCUGAAGAGCUUUGGCGACAAGACCGCCAACUUGUUCAGCAAGAAGAAGGAUGAGGCCGAGAAGCUGGCCAACGAAAAGGCAGCCGAGGCACAGAAACU---GGCUGAGGA ((((..((((....(((((((((.......)(((..(((.(((.....))).))).....(((((......)))))........))).)))))))).))))....---))))..... ( -38.50, z-score = -1.06, R) >droGri2.scaffold_15112 942507 114 - 5172618 AGCGUCCCUGAAGAGCUUUGGCGACAAGACCGCCAAUCUGUUCAGCAGGAAGAAGGACGAGGCCGAGAAGUUGGCCAGCGACAAAUCUGUCGAGGCACAGAAGAU---GGCCGAGGA ..((((((((((.((..((((((.......)))))).)).))))).........))))).(((((.....((((((..(((((....))))).))).)))....)---))))..... ( -43.30, z-score = -2.61, R) >droWil1.scaffold_180701 3686253 114 - 3904529 AGCCUCUUUGAAGAACUUUGGCGACAAGACAGCCAAUCUGUUCAGCAAGAAGAAGGAUGAGGCUGAGAAAUUGGCCAACGAUAAGGCCACCGAGGCACAGAAGCU---AGCCGAAGA ...............(((((((.......(((((.((((.(((.....)))...))))..)))))......(((((........)))))....(((......)))---.))))))). ( -33.70, z-score = -1.74, R) >droVir3.scaffold_12875 6033672 114 - 20611582 AGCCUCCCUGAAGAGCUUUGGCGACAAGACCGUCAACUUGUUCAGCAAGAAGAAGGAUGAGGCCGAGAAGUUGGCCAGCGACAAGGCUGUCGAGGCGCAAAAACU---AGCCGAGGA ..((((..(((..(((((((.((.(....((.((..((((.....))))..)).))....((((((....)))))).))).))))))).))).(((.........---.))))))). ( -38.50, z-score = -1.11, R) >anoGam1.chr3L 6473351 114 - 41284009 AGCCUCGUUGAAGAACCUUGGCAGCAAGGCCGAAGGGCUGUUUGAUAAGAAGAAGAAGGAGGCGCAAGAUCUGGCCAACGAGAAGGUACAGGCCGCCAGCAGCAU---GGCCGAGGA ..((((((((..((...))..))))..(((((....((((((.(.............(((..(....).)))((((.((......))...)))).).)))))).)---)))))))). ( -35.90, z-score = -0.18, R) >droPer1.super_4 4500128 114 + 7162766 AGCCUCGUUGAAGAACAUUGGCGACAAGACCGCCAGUCUGUUCAGCAAGAAGAAGGAUGAGGCUGAGAAAUUGGCCAACGAUAAGGCUGUCGAGGCUCAGAAGCU---AGCCGAGGA ..((((((((((.(..(((((((.......))))))).).))))))..............(((..(....)..)))..(((((....))))).((((........---)))))))). ( -40.10, z-score = -2.22, R) >dp4.chr3 11000993 114 + 19779522 AGCCUCGUUGAAGAACAUUGGCGACAAGACCGCCAGUCUGUUCAGCAAGAAGAAGGAUGAGGCUGAGAAAUUGGCCAAUGAUAAGGCUGUCGAGGCUCAGAAGCU---AGCCGAGGA ..((((((((((.(..(((((((.......))))))).).))))))..............(((..(....)..)))........((((.....((((....))))---)))))))). ( -39.60, z-score = -2.21, R) >droYak2.chr2L 18325182 114 - 22324452 AGCUUCGUUGAAGAACUUCGGCGACAAGACCGCCAACCUCUUCAGCAAGAAGAAGGAUGAGGCCGAGAAGCUGGCCAACGAGAAGGCCGCCGAGGCCCAGAAGCU---AGCCGAGGA ((((((((((((((..((.((((.......))))))..))))))))...........((.((((..(..((.((((........)))))))..))))))))))))---......... ( -43.00, z-score = -2.21, R) >droSim1.chr2R 4337870 114 - 19596830 AGCUUCCUUGAAGAACUUCGGCGACAAGACCGCCAACCUCUUCAGCAAGAAGAAGGAUGAGGCCGAGAAGCUGGCCAACGAGAAGGCCGCCGAGGCCCAGAAGCU---AGCCGAGGA ....((((((.....((((((((.......))))..(((((((.....)))).))).((.((((..(..((.((((........)))))))..))))))))))..---...)))))) ( -41.60, z-score = -1.79, R) >triCas2.ChLG5 7048633 92 + 18847211 -------------------------AAGAACGCCAUCAUCAUCAUGAGGGUGAGGAAGGAGGCCGCGGAGGUGGCGAAGAAGAAGGACGCGGAGGCGAGGAACAUUGGGGCCGCGGU -------------------------.....(((((((.(((((.....)))))((.......)).....)))))))...........(((((...(((......)))...))))).. ( -28.20, z-score = -1.59, R) >consensus AGCCUCCUUGAAGAACUUUGGCGACAAGACCGCCAACCUGUUCAGCAAGAAGAAGGAUGAGGCCGAGAAGCUGGCCAACGAGAAGGCUGCCGAGGCCCAGAAGCU___AGCCGAGGA ...............(((((((.........(((..(((.(((.....)))..)))....(((((......))))).................))).............))))))). (-17.11 = -17.17 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:04 2011