| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,685,674 – 5,685,776 |
| Length | 102 |
| Max. P | 0.962673 |
| Location | 5,685,674 – 5,685,776 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 80.95 |
| Shannon entropy | 0.29882 |
| G+C content | 0.36985 |
| Mean single sequence MFE | -24.60 |
| Consensus MFE | -16.88 |
| Energy contribution | -17.75 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.71 |
| SVM RNA-class probability | 0.962673 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5685674 102 + 21146708 CAGAUAUGACAUGACUGAAAAGAACGUUCGUAAGUGAGGCCACUAAAGCAAAAGCG------AGAGUGUGCAAAAACUUAUUAUUAGUGUGUAAUAUUUGUAAAAUUA (((((((.((((.(((((...((....))((((((...((((((...((....)).------..)))).))....))))))..))))))))).)))))))........ ( -25.60, z-score = -3.47, R) >droSim1.chr2R 4323340 102 + 19596830 CAGAUAUGACAUGGCUCAAAAGAAAGGUCGUAAGUGAGGACACUAAAGAGAGAGCG------AGAGUGUGCAAAAACUUAAUAUUAGUGUGUUAUAUCUGUAAAAUUA ((((((((((((((((.........)))).(((((..(.(((((...(......).------..))))).)....)))))........))))))))))))........ ( -25.50, z-score = -3.36, R) >droSec1.super_1 3294656 102 + 14215200 CAGAUAUGACAUGGCUCAAAAGGAAGGUCGUAAGUGAGGACACUAAAGCGAGAGCG------AGAGUGUGCAAAAACUUAAUAUUAGUGUGUUAUAUCUGUAAAAUUA ((((((((((((((((.........)))).(((((..(.(((((...((....)).------..))))).)....)))))........))))))))))))........ ( -31.60, z-score = -5.07, R) >droYak2.chr2L 18310532 107 + 22324452 CAGAUAUGACGUGGCUCAAAAGAACGGUUGCAAGCGAGGGAACUAGAGCGAAAGGAGUAGGCAAAAUGUCCCGAAACUUAUUGUUGGUGUGUAAUUUCUACAAAAUA- .(((.....(((..((....)).)))((((((.((..((((.(((...(....)...)))........))))..(((.....))).)).)))))).)))........- ( -15.70, z-score = 2.04, R) >consensus CAGAUAUGACAUGGCUCAAAAGAAAGGUCGUAAGUGAGGACACUAAAGCGAAAGCG______AGAGUGUGCAAAAACUUAAUAUUAGUGUGUAAUAUCUGUAAAAUUA ((((((((((((((((.........))))))........(((((((.((....))........((((........))))....)))))))))))))))))........ (-16.88 = -17.75 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:02 2011