| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,682,345 – 5,682,401 |
| Length | 56 |
| Max. P | 0.769603 |
| Location | 5,682,345 – 5,682,401 |
|---|---|
| Length | 56 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 79.75 |
| Shannon entropy | 0.35040 |
| G+C content | 0.41146 |
| Mean single sequence MFE | -12.90 |
| Consensus MFE | -9.12 |
| Energy contribution | -8.36 |
| Covariance contribution | -0.76 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.769603 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5682345 56 - 21146708 AAUAUGGCAUUUCUCGGGCUGAGUUUGUCGCGGGUCUUGCCAAUCUUUCUGGCAAC- ....(((((...(((((((.......))).))))...)))))..............- ( -15.80, z-score = -1.63, R) >droEre2.scaffold_4929 17957537 53 + 26641161 ----AGGCAUUUCUCAGGCUGAGUUUGUCUUAAGUUUUGCCAAACUUUCCUUCAAAG ----.((((...((.((((.......))))..))...))))................ ( -9.70, z-score = -0.56, R) >droYak2.chr2L 18307171 53 - 22324452 ----AGGCAUUUUUCAGGUUGAGUUUGGCUUAAGUUUUGCCAAACUUUCAUACAAAU ----.............((.(((((((((.........)))))))))....)).... ( -12.40, z-score = -2.05, R) >droSec1.super_1 3291355 56 - 14215200 AAUAUGGCAGUUCUCAGGCUGAGAUUGUCUCAAGUCUUGCCAAACUUUCUUGCAAC- ....(((((......((((((((.....))).))))))))))..............- ( -13.60, z-score = -1.21, R) >droSim1.chr2R 4314148 56 - 19596830 AAUAUGGCAUUUCUCAGGCUGAGUUUGUCUCAAGUCUUGCCAAACUUUCUUACAAC- ....(((((......((((((((.....))).))))))))))..............- ( -13.00, z-score = -2.31, R) >consensus AAUAUGGCAUUUCUCAGGCUGAGUUUGUCUCAAGUCUUGCCAAACUUUCUUACAAC_ .....((((......((((((((.....))).)))))))))................ ( -9.12 = -8.36 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:01 2011