| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,677,348 – 5,677,439 |
| Length | 91 |
| Max. P | 0.936435 |
| Location | 5,677,348 – 5,677,439 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 86.02 |
| Shannon entropy | 0.25817 |
| G+C content | 0.51909 |
| Mean single sequence MFE | -38.55 |
| Consensus MFE | -27.94 |
| Energy contribution | -27.29 |
| Covariance contribution | -0.65 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.936435 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5677348 91 + 21146708 GUUGCGUGUGCCGUAGACAUUUUUAUGGC-AUGCAGCGAAC-------UGCCAGAUGGCAGCUGCCGCUUGGCACUUGCCGCAAAAUAGGG---AAAAUGCU .((((((((((((((((....))))))))-)))).((((..-------((((((.((((....)))).)))))).)))).)))).......---........ ( -36.80, z-score = -1.94, R) >droSim1.chr2R 4308854 91 + 19596830 GUUGCGUGUGCCGUAGACAUUUUUAUGGC-AUGCAGCGAAC-------UGCCAGAUGGCAGCUGCCGCUUGGCACUUGCCGCAAAAUAGGG---AAAAUGCU .((((((((((((((((....))))))))-)))).((((..-------((((((.((((....)))).)))))).)))).)))).......---........ ( -36.80, z-score = -1.94, R) >droSec1.super_1 3286342 91 + 14215200 GUUGCGUGUGCCAUAGACAUUUUUAUGGC-AUGCAGCGAAC-------UGCCAGAUGGCAGCUGCCGCUUGGCACUUGCCGCAAAAUAGGG---AAAAUGCU .((((((((((((((((....))))))))-)))).((((..-------((((((.((((....)))).)))))).)))).)))).......---........ ( -37.20, z-score = -2.27, R) >droEre2.scaffold_4929 17952678 91 - 26641161 GUUGCGUGUGCCGUAGACAUUUUUAUGGC-AUGCAGCGAAC-------UGCCAGAUGGCAGCUGCCGCUUGGCACUUGCCGCAAAAUAGGG---AAAAUGCU .((((((((((((((((....))))))))-)))).((((..-------((((((.((((....)))).)))))).)))).)))).......---........ ( -36.80, z-score = -1.94, R) >droYak2.chr2L 18301807 91 + 22324452 GUUGCGUGUGCCGUAGACAUUUUUAUGGC-AUGCAGCGAAC-------UGCCAGAUGGCAGCUGCCGCUUGGCACUUGCCGCAAAAUAGGG---AAAAUGCU .((((((((((((((((....))))))))-)))).((((..-------((((((.((((....)))).)))))).)))).)))).......---........ ( -36.80, z-score = -1.94, R) >droAna3.scaffold_13266 12947560 95 + 19884421 GUUGCGUGUGCCGUAGACGUUUUUAUGGC-AUGCAGUGGAACUG---AUGGCAGAUGGCAGCUGCCGCUUGCCACUUGCCGCAAAAUAGGG---AAAAUGCU ...((((((((((((((....))))))))-)))).((((....(---.((((((.((((....)))).)))))))...)))).........---.....)). ( -37.40, z-score = -1.88, R) >dp4.chr3 14298134 102 + 19779522 GUUGCGUGUGCUGUAGUUAUUUUUAUGGCCAUGCACUGUAACAGCCAGAGUCAGAUGGCAGCUGCCGUCUGGCACUUGGCGUCAAGUAUGGGAAAAAAUGCU ..((((((.(((((((......)))))))))))))........(((((.((((((((((....)))))))))).).))))....(((((........))))) ( -41.50, z-score = -3.01, R) >droPer1.super_4 6144669 102 - 7162766 GUUGCGUGUGCUGUAGUCAUUUUUAUGGCCAUGCACUGUAACAGCCAGAGUCAGACGGCAGCUGCCGUCUGGCACUUGGCGUCAAGUAUGGGAAAAAAUGCU ((((((.((((....(((((....)))))...)))))))))).(((((.((((((((((....)))))))))).).))))....(((((........))))) ( -45.10, z-score = -3.89, R) >consensus GUUGCGUGUGCCGUAGACAUUUUUAUGGC_AUGCAGCGAAC_______UGCCAGAUGGCAGCUGCCGCUUGGCACUUGCCGCAAAAUAGGG___AAAAUGCU .((((((((((((((((....)))))))).))))...............(((((.((((....)))).))))).......)))).................. (-27.94 = -27.29 + -0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:11:00 2011