| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,648,213 – 5,648,263 |
| Length | 50 |
| Max. P | 0.816960 |
| Location | 5,648,213 – 5,648,263 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 88.60 |
| Shannon entropy | 0.20566 |
| G+C content | 0.58400 |
| Mean single sequence MFE | -13.88 |
| Consensus MFE | -12.06 |
| Energy contribution | -11.74 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.816960 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5648213 50 + 21146708 UGAGGACCUCUCCGGCAUACGGAGAACAGAGGACAGGAUACGGUUUACGC .(..((((((((((.....))))))..........(....)))))..).. ( -13.60, z-score = -1.80, R) >droEre2.scaffold_4929 17923189 50 - 26641161 UCCGGACCACUCCGGCAUACGGAGUACACAGCACGGGAUACGGUUUACGC ...(((((((((((.....)))))).........(.....)))))).... ( -13.70, z-score = -1.18, R) >droYak2.chr2L 18272573 50 + 22324452 UCAGAACCUCUUCGGCAUACGGAGCACAGAGGACGGGACACGGCUCCCGC ......(((((...((.......))..))))).(((((......))))). ( -15.70, z-score = -1.53, R) >droSec1.super_1 3257327 50 + 14215200 UCAGGACCUCUCCGGCAUACGGAGAACAGAGGACAGGAUACGGUUUACGC ...(((((((((((.....))))))..........(....)))))).... ( -13.20, z-score = -1.70, R) >droSim1.chr2R 4285399 50 + 19596830 UCAGGACCUCUCCGGCAUACGGAGAACAGAGGACAGGAUACGGUUUACGC ...(((((((((((.....))))))..........(....)))))).... ( -13.20, z-score = -1.70, R) >consensus UCAGGACCUCUCCGGCAUACGGAGAACAGAGGACAGGAUACGGUUUACGC ...(((((((((((.....))))))..........(....)))))).... (-12.06 = -11.74 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:57 2011