| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,641,446 – 5,641,555 |
| Length | 109 |
| Max. P | 0.629810 |
| Location | 5,641,446 – 5,641,555 |
|---|---|
| Length | 109 |
| Sequences | 8 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 83.27 |
| Shannon entropy | 0.32914 |
| G+C content | 0.44873 |
| Mean single sequence MFE | -27.22 |
| Consensus MFE | -16.37 |
| Energy contribution | -16.82 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.629810 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5641446 109 - 21146708 GAUAUAGCCACGUAAUUCAGUUGGC-UCACGGACUGCACUUAAGCCACUUAUAACCAAGCGU----ACGGAUACGUACUUCUUGCAUUCCGGCACAUAAAAACGUGUGCAAUUG .....((((((........).))))-)..((((.((((.....((.............))((----(((....)))))....)))).))))((((((......))))))..... ( -30.82, z-score = -2.60, R) >droSim1.chr2R 4276649 109 - 19596830 GAUAUAGCCACGUAAUUCAGUUGGC-UCACGGACUGCACUUAAGCCACUUAUAACCAAGCGU----ACGGAUACGUACUUCUUGCAUUCCGGCACAUAAAAACGUGUGCAAUUG .....((((((........).))))-)..((((.((((.....((.............))((----(((....)))))....)))).))))((((((......))))))..... ( -30.82, z-score = -2.60, R) >droSec1.super_1 3250616 109 - 14215200 GAUAUAGCCACGUAAUUCAGUUGGC-UCACGGACUGCACUUAAGCCACUUAUAACCAAGCGU----ACGGAUACGUACUUCUUGCAUUCCGGCACAUAAAAACGUGUGCAAUUG .....((((((........).))))-)..((((.((((.....((.............))((----(((....)))))....)))).))))((((((......))))))..... ( -30.82, z-score = -2.60, R) >droYak2.chr2L 18267463 113 - 22324452 GAUAUAGCCACGUAAUUCAGUUGGC-UCACGGACUGCACUUAAGCCACUUAUAACCAAGCGUACGGACGGAUACGUACUUCUUGCAUUCCGGCACAUAAAAACGUGUGCAAUUG .....((((((........).))))-)..((((.((((.....((.............))(((((........)))))....)))).))))((((((......))))))..... ( -30.82, z-score = -1.99, R) >droEre2.scaffold_4929 17918266 109 + 26641161 GAUAUAGCCACGUAAUUCAGUUGGC-CCACGGACUGCACUUAAGCCACUUAUAGCCAAGCGC----ACGGAUACGUACUUCUUGCAUUCCGGCACAUAAAAACGUGUGCAAUUG ......(((((........).))))-...((((.((((.....((..(((......))).))----(((....)))......)))).))))((((((......))))))..... ( -26.90, z-score = -0.75, R) >droAna3.scaffold_13266 12913953 109 - 19884421 --UAUAACCAUAUAAUUCAGUUGGC-UUAUGGUCAGCACUUAAGCCACUCUU--CCGAAUACGGAUACGGGUACGUACUUCUUGCAUUCCGGCGCAUAGAAACGUGUGCAAUUG --....((((((.............-.))))))..((((....(((.....(--(((....))))....)))((((..(((((((........))).))))))))))))..... ( -25.74, z-score = -0.64, R) >dp4.chr3 14265135 88 - 19779522 GAUAUAGCCACAUAAUUCAGUUGGCUUCUCGGACUGCUCUUAAGCCACU--------------------------UACUUCUUGCAUUCCAGCGCAUAAAAACGUGUGCAAUUG ((...((((((........).)))))..))(((.(((....(((.....--------------------------..)))...))).))).((((((......))))))..... ( -20.90, z-score = -1.90, R) >droPer1.super_4 6111982 88 + 7162766 GAUAUAGCCACAUAAUUCAGUUGGCUUCUCGGACUGCUCUUAAGCCACU--------------------------UACUUCUUGCAUUCCAGCGCAUAAAAACGUGUGCAAUUG ((...((((((........).)))))..))(((.(((....(((.....--------------------------..)))...))).))).((((((......))))))..... ( -20.90, z-score = -1.90, R) >consensus GAUAUAGCCACGUAAUUCAGUUGGC_UCACGGACUGCACUUAAGCCACUUAUAACCAAGCGU____ACGGAUACGUACUUCUUGCAUUCCGGCACAUAAAAACGUGUGCAAUUG ......(((((........).))))....((((.((((...(((.................................)))..)))).))))((((((......))))))..... (-16.37 = -16.82 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:54 2011