| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,627,323 – 5,627,433 |
| Length | 110 |
| Max. P | 0.839841 |
| Location | 5,627,323 – 5,627,433 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 88.31 |
| Shannon entropy | 0.15861 |
| G+C content | 0.39076 |
| Mean single sequence MFE | -31.37 |
| Consensus MFE | -24.04 |
| Energy contribution | -23.27 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.839841 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5627323 110 - 21146708 AAACGCUUGGAUGGUAUGCCAUAAAGAUGGGAGAUAUCUCUUGUCCAGGCAAUUGCAUCCUUGUAAUUCAAUCUUCUGUAGUGGAUCUAUAUUUGUUAAAGCGGAAACUA ....(((((.((((....))))...((..((((....))))..)))))))(((((((....)))))))...(((.((.(((..(((....)))..))).)).)))..... ( -29.40, z-score = -1.79, R) >droSec1.super_1 3236754 105 - 14215200 AAACGGUUGGAUGGUAUGCCGUAAAGAUGGGAGAUAUCUCUUGUCCAGGCAAUUGCCU-----GGAUCUAUAUUUCUGUAGGGGAUAUAUAUUUCUUAAAGCAGAAACUA ..(((((..........)))))......(((((....)))))((((((((....))))-----)))).....((((((((((..((....))..)))...)))))))... ( -32.40, z-score = -2.67, R) >droSim1.chr2R 4262707 105 - 19596830 AAACGGUUGGAUGGUAUGCCGUAAAGAUGGGAGAUAUCUCUUGUCCAGGCAAUUGCCU-----GGAUCUAUAUUUCUGUAGGGGAUCUAUAUUUCUUAAAGCAGAAACUA ..(((((..........)))))......(((((....)))))((((((((....))))-----)))).....(((((((..((((........))))...)))))))... ( -32.30, z-score = -2.36, R) >consensus AAACGGUUGGAUGGUAUGCCGUAAAGAUGGGAGAUAUCUCUUGUCCAGGCAAUUGCCU_____GGAUCUAUAUUUCUGUAGGGGAUCUAUAUUUCUUAAAGCAGAAACUA .......(((((((((((((.....((..((((....))))..))..))))..))))........)))))...(((((((((..((....))..)))...)))))).... (-24.04 = -23.27 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:52 2011