| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,612,540 – 5,612,591 |
| Length | 51 |
| Max. P | 0.613644 |
| Location | 5,612,540 – 5,612,591 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 91.57 |
| Shannon entropy | 0.14989 |
| G+C content | 0.31882 |
| Mean single sequence MFE | -5.20 |
| Consensus MFE | -5.24 |
| Energy contribution | -4.92 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.29 |
| Mean z-score | -0.60 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.613644 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5612540 51 - 21146708 UUUUAUUGUUUUUAAAAUAGUAGCCAUCAAUCGGUUAUUCCAGCACACAUA ..................(((((((.......)))))))............ ( -5.10, z-score = -1.36, R) >droEre2.scaffold_4929 17897375 51 + 26641161 CUUAAUUGUUUUUAAAAUAGUGGCCAUCAGUCGGUUAUUCCAGCCCACAUA ...................((((......((.((.....)).))))))... ( -5.70, z-score = -0.11, R) >droYak2.chr2L 18245805 50 - 22324452 -UUAAUUGUUUUUAAAAUAGUGGCCAUCAAUCGGUUAUUUCAGCACACAUA -.....(((.........(((((((.......))))))).......))).. ( -4.79, z-score = -0.33, R) >droSec1.super_1 3229391 51 - 14215200 UUUUAUUGUUUUUAAAACAGUGACCAUCAAUCGGUUAUUCCAGCAUACAUA ..((((((((.....)))))))).........((.....)).......... ( -5.60, z-score = -1.07, R) >droSim1.chr2R 4254249 51 - 19596830 UUUUAUUGUUUUUAAAACAGUGGCCAUCAAUCGGUUAUUCCAGCACACAUA ...(((((((.....)))))))(((.......)))................ ( -4.80, z-score = -0.11, R) >consensus UUUUAUUGUUUUUAAAAUAGUGGCCAUCAAUCGGUUAUUCCAGCACACAUA ..................(((((((.......)))))))............ ( -5.24 = -4.92 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:50 2011