| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,595,010 – 5,595,067 |
| Length | 57 |
| Max. P | 0.884116 |
| Location | 5,595,010 – 5,595,067 |
|---|---|
| Length | 57 |
| Sequences | 3 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 90.59 |
| Shannon entropy | 0.12888 |
| G+C content | 0.29000 |
| Mean single sequence MFE | -7.97 |
| Consensus MFE | -7.31 |
| Energy contribution | -7.20 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.884116 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5595010 57 + 21146708 UCUAGUAGUCCAUGAUUUUGUGUCGUUCAUUUGUAUAGCAAGUAAUUUAAAAUCAAA ............((((((((....(((.(((((.....)))))))).)))))))).. ( -7.30, z-score = -1.90, R) >droSec1.super_1 3212445 56 + 14215200 UCUAGUAGUCCAUGACUUUGUGUCGUUCAGUUGUAUAGCAACUUUUUUAAAAUCAA- ...........(((((.....)))))..(((((.....))))).............- ( -7.50, z-score = -0.98, R) >droSim1.chr2R 4236814 56 + 19596830 UCUAGUAGUCCAUGAUUUUGUGUCUUUUAGUUGUAUAGCAACUUUUUUAAAAUCAA- ............((((((((........(((((.....)))))....)))))))).- ( -9.10, z-score = -2.25, R) >consensus UCUAGUAGUCCAUGAUUUUGUGUCGUUCAGUUGUAUAGCAACUUUUUUAAAAUCAA_ ............((((((((........(((((.....)))))....)))))))).. ( -7.31 = -7.20 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:49 2011