| Sequence ID | dm3.chr2R |
|---|---|
| Location | 5,592,088 – 5,592,142 |
| Length | 54 |
| Max. P | 0.549835 |
| Location | 5,592,088 – 5,592,142 |
|---|---|
| Length | 54 |
| Sequences | 8 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 66.01 |
| Shannon entropy | 0.65706 |
| G+C content | 0.53241 |
| Mean single sequence MFE | -11.99 |
| Consensus MFE | -6.47 |
| Energy contribution | -6.26 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.55 |
| Mean z-score | -0.40 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.549835 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 5592088 54 - 21146708 CGCCAUCCAAGGCUGAGACAUUAGCGACGAUUUUCUGCCGCCGGUGAUCAUAAA .(((......)))(((..(((..(((.((......)).)))..))).))).... ( -13.50, z-score = -0.96, R) >droPer1.super_31 309921 54 - 935084 UGCCAUCCAUGGUCUGGAGCCUAAUUUCACUUCCUUGCCAUUAACGACGCGGAA .....((((((((..((((...........))))..))))).........))). ( -9.00, z-score = 0.38, R) >dp4.chr3 2297853 54 + 19779522 UGCCAUCCAUGGUCUGGAGCCUAAUUUCACUUCCUUGCCAUUAACGACGCGGAA .....((((((((..((((...........))))..))))).........))). ( -9.00, z-score = 0.38, R) >droEre2.scaffold_4929 17879301 54 + 26641161 UGCCAUCCAAGGCUGGGACAUUAGCGACGACUUCCUGCCACCGGUGAUCCGCCG ..........(((.((((..((......))..)))))))..(((((...))))) ( -12.20, z-score = 0.58, R) >droYak2.chr2L 18224770 54 - 22324452 UGCCAUCCAAGGCUGGGACAUCAGCGACGAUUUCCGACCGCCGGUGAUCCUCCG .(((......))).((((((((.(((.((.....))..))).)))).))))... ( -16.50, z-score = -0.79, R) >droSec1.super_1 3209723 54 - 14215200 CGCCAUCCAAGGCUGAGACAUUAGCGACGAUUUUCUGCCGCCGGUGAUCAUUAG .(((......)))(((..(((..(((.((......)).)))..))).))).... ( -13.50, z-score = -0.99, R) >droSim1.chr2R 4233920 54 - 19596830 CGCCAUCCAAGGCUGAGACAUUAGCGACGAUUUUCUGCCGCCGGUGAUCAUUAG .(((......)))(((..(((..(((.((......)).)))..))).))).... ( -13.50, z-score = -0.99, R) >droVir3.scaffold_12875 444637 54 - 20611582 AGCCAUCCAAGGUCUUGACAUUAAUUUAACUUCGGUUCCGCCGAUUGUCUUUAA .(((......)))...((((...........((((.....)))).))))..... ( -8.70, z-score = -0.79, R) >consensus UGCCAUCCAAGGCUGGGACAUUAGCGACGAUUUCCUGCCGCCGGUGAUCCUUAA ...((((...(((.((((.............)))).)))...))))........ ( -6.47 = -6.26 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:10:48 2011