| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,433,384 – 2,433,491 |
| Length | 107 |
| Max. P | 0.855227 |
| Location | 2,433,384 – 2,433,491 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 83.90 |
| Shannon entropy | 0.29205 |
| G+C content | 0.44873 |
| Mean single sequence MFE | -27.19 |
| Consensus MFE | -20.82 |
| Energy contribution | -20.33 |
| Covariance contribution | -0.49 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.855227 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2433384 107 + 23011544 CCCCCCCCCCAUCCAUUGGCAUCGCGGCAAAAGGUCUUCUUUGUUGUGAGUUGGAAAAGAGGAAAAAAUCAUAAUAACAACGAGC--AGAAGAGGAUCGCCAAGAAGGG .....((((((.....)))..((..(((....((((((((((..(((..((((........((.....)).......))))..))--))))))))))))))..)).))) ( -26.96, z-score = -0.46, R) >droAna3.scaffold_12913 168874 96 - 441482 -------------CUCCGUUGAUGCUGCGAAAGGUCUUCUUUGUUGCGAGUUGGAAAAAAGGCAAAAAUUAUUAUAACAGGAGACGAAGAAGAAGAUCGGCGAGAAGAA -------------.(((((((((.((.(....).((((((((.((((...((....))...))))..............(....)))))))))))))))))).)).... ( -24.00, z-score = -1.54, R) >droEre2.scaffold_4929 2475873 96 + 26641161 ----------CCCCUUUGGCAUCACGGCAAAAGGUCUUCUUUGUUGUGAGUUGCAAAGG-GGAAAAAAUCAUAAUAACAGCGAGC--AGAAGAGGAUCGCCAAGAAGGG ----------((((((((.((((((((((((........))))))))))..))))))))-)).................((((..--.........))))......... ( -28.50, z-score = -1.95, R) >droYak2.chr2L 2422801 97 + 22324452 ----------CCCCUUUGGCAUCACGGCAAAAGGUCUUCUUUGUUGUGAGUUGGAAAAGAGGAAAAAAUCAUAAUAACAGCGAGC--AGAAGAGGAUCGCCAAGAAGGG ----------.(((((((......)(((....((((((((((..(((..((((........((.....)).......))))..))--))))))))))))))..)))))) ( -27.46, z-score = -1.95, R) >droSec1.super_5 606996 98 + 5866729 ---------ACCCCUUUGGCAUCACGGCAAAAGGUCUUCUUUGUUGUGAGUUGGAAAAGAGGAAAAAAUCAUAAUAACAACGAUC--AGAAGAGGAUCGCCAAGAAGGG ---------..(((((((((.((((((((((........))))))))))((((........((.....)).......))))((((--.......))))))))..))))) ( -28.76, z-score = -2.57, R) >droSim1.chr2L 2392537 98 + 22036055 ---------ACCCCUUUGGCAUCACGGCAAAAGGUCUUCUUUGUUGUGAGUUGGAAAAGAGGAAAAAAUCAUAAUAACAACGAGC--AGAAGAGGAUCGCCAAGAAGGG ---------..(((((((......)(((....((((((((((..(((..((((........((.....)).......))))..))--))))))))))))))..)))))) ( -27.46, z-score = -2.09, R) >consensus __________CCCCUUUGGCAUCACGGCAAAAGGUCUUCUUUGUUGUGAGUUGGAAAAGAGGAAAAAAUCAUAAUAACAACGAGC__AGAAGAGGAUCGCCAAGAAGGG ...........(((((((((.((((((((((........))))))))))((((........((.....)).......)))).................)))))..)))) (-20.82 = -20.33 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:15 2011